Strain Fitness in Variovorax sp. SCN45 around GFF2156

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2155 and GFF2156 are separated by 49 nucleotidesGFF2156 and GFF2157 are separated by 0 nucleotidesGFF2157 and GFF2158 are separated by 8 nucleotides GFF2155 - Signal transduction histidine kinase CheA, at 203,153 to 209,362 GFF2155 GFF2156 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 209,412 to 210,911 GFF2156 GFF2157 - UPF0301 protein YqgE, at 210,912 to 211,511 GFF2157 GFF2158 - Putative pre-16S rRNA nuclease YqgF, at 211,520 to 211,969 GFF2158 Position (kb) 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 208.550 kb on + strand, within GFF2155at 208.550 kb on + strand, within GFF2155at 208.551 kb on - strand, within GFF2155at 208.595 kb on + strand, within GFF2155at 208.596 kb on - strand, within GFF2155at 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.821 kb on - strandat 208.821 kb on - strandat 208.821 kb on - strandat 208.821 kb on - strandat 208.821 kb on - strandat 209.246 kb on + strandat 209.247 kb on - strandat 209.273 kb on + strandat 209.273 kb on + strandat 209.274 kb on - strandat 209.274 kb on - strandat 209.274 kb on - strandat 209.274 kb on - strandat 209.325 kb on - strandat 209.379 kb on + strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.500 kb on + strandat 209.500 kb on + strandat 209.500 kb on + strandat 209.500 kb on + strandat 209.501 kb on - strandat 209.501 kb on - strandat 209.603 kb on - strand, within GFF2156at 209.603 kb on - strand, within GFF2156at 209.671 kb on + strand, within GFF2156at 209.672 kb on - strand, within GFF2156at 209.672 kb on - strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.762 kb on - strand, within GFF2156at 209.762 kb on - strand, within GFF2156at 209.842 kb on + strand, within GFF2156at 209.842 kb on + strand, within GFF2156at 209.843 kb on - strand, within GFF2156at 209.843 kb on - strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.963 kb on - strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.203 kb on - strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.265 kb on - strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.428 kb on - strand, within GFF2156at 210.428 kb on - strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.446 kb on - strand, within GFF2156at 210.446 kb on - strand, within GFF2156at 210.446 kb on - strand, within GFF2156at 210.502 kb on + strand, within GFF2156at 210.502 kb on + strand, within GFF2156at 210.502 kb on + strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.780 kb on + strandat 210.781 kb on - strandat 210.781 kb on - strandat 210.817 kb on + strandat 210.817 kb on + strandat 210.818 kb on - strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.878 kb on - strandat 210.878 kb on - strandat 210.878 kb on - strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.912 kb on - strandat 210.912 kb on - strandat 210.912 kb on - strandat 210.912 kb on - strandat 210.912 kb on - strandat 211.005 kb on + strand, within GFF2157at 211.005 kb on + strand, within GFF2157at 211.005 kb on + strand, within GFF2157at 211.006 kb on - strand, within GFF2157at 211.006 kb on - strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.335 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
208,550 + GFF2155 0.87 -0.3
208,550 + GFF2155 0.87 -0.2
208,551 - GFF2155 0.87 +1.3
208,595 + GFF2155 0.88 +0.2
208,596 - GFF2155 0.88 -0.3
208,820 + -0.7
208,820 + +0.6
208,820 + -2.2
208,820 + -0.2
208,820 + -0.6
208,820 + +0.7
208,821 - +0.2
208,821 - -3.0
208,821 - +0.0
208,821 - -0.2
208,821 - -0.8
209,246 + +0.3
209,247 - +0.2
209,273 + +0.7
209,273 + -0.4
209,274 - -1.3
209,274 - -0.0
209,274 - +0.0
209,274 - -1.3
209,325 - +0.1
209,379 + +0.5
209,380 - -0.1
209,380 - -0.1
209,380 - -0.8
209,380 - -0.2
209,500 + -0.2
209,500 + -0.3
209,500 + -0.4
209,500 + -0.7
209,501 - -0.2
209,501 - -0.2
209,603 - GFF2156 0.13 -0.5
209,603 - GFF2156 0.13 -1.2
209,671 + GFF2156 0.17 -1.1
209,672 - GFF2156 0.17 +0.3
209,672 - GFF2156 0.17 +0.1
209,761 + GFF2156 0.23 -0.1
209,761 + GFF2156 0.23 -0.4
209,761 + GFF2156 0.23 +0.5
209,761 + GFF2156 0.23 -0.8
209,761 + GFF2156 0.23 +0.3
209,762 - GFF2156 0.23 -0.2
209,762 - GFF2156 0.23 -0.2
209,842 + GFF2156 0.29 -1.2
209,842 + GFF2156 0.29 +1.0
209,843 - GFF2156 0.29 +0.4
209,843 - GFF2156 0.29 -1.0
209,962 + GFF2156 0.37 +0.1
209,962 + GFF2156 0.37 +0.4
209,962 + GFF2156 0.37 -0.2
209,963 - GFF2156 0.37 -0.4
210,004 + GFF2156 0.39 +0.1
210,004 + GFF2156 0.39 +0.3
210,004 + GFF2156 0.39 -0.8
210,005 - GFF2156 0.40 -0.5
210,005 - GFF2156 0.40 -0.2
210,005 - GFF2156 0.40 -1.7
210,031 + GFF2156 0.41 -1.2
210,031 + GFF2156 0.41 -1.8
210,031 + GFF2156 0.41 +0.4
210,032 - GFF2156 0.41 +0.5
210,032 - GFF2156 0.41 +0.7
210,032 - GFF2156 0.41 -1.2
210,160 + GFF2156 0.50 -0.6
210,160 + GFF2156 0.50 -1.2
210,160 + GFF2156 0.50 -0.2
210,160 + GFF2156 0.50 +0.2
210,160 + GFF2156 0.50 +0.3
210,160 + GFF2156 0.50 -0.2
210,160 + GFF2156 0.50 -2.2
210,161 - GFF2156 0.50 +0.8
210,161 - GFF2156 0.50 +0.8
210,161 - GFF2156 0.50 -1.1
210,161 - GFF2156 0.50 -0.7
210,161 - GFF2156 0.50 +1.5
210,161 - GFF2156 0.50 +1.3
210,161 - GFF2156 0.50 -0.4
210,203 - GFF2156 0.53 -0.4
210,264 + GFF2156 0.57 +0.8
210,264 + GFF2156 0.57 +0.8
210,264 + GFF2156 0.57 -0.4
210,264 + GFF2156 0.57 -0.0
210,265 - GFF2156 0.57 -1.5
210,427 + GFF2156 0.68 -0.5
210,427 + GFF2156 0.68 -1.0
210,427 + GFF2156 0.68 +0.0
210,427 + GFF2156 0.68 +0.1
210,427 + GFF2156 0.68 +0.4
210,427 + GFF2156 0.68 -0.4
210,428 - GFF2156 0.68 -1.8
210,428 - GFF2156 0.68 +0.5
210,445 + GFF2156 0.69 -0.9
210,445 + GFF2156 0.69 -0.4
210,445 + GFF2156 0.69 +0.3
210,445 + GFF2156 0.69 -0.5
210,445 + GFF2156 0.69 +0.8
210,446 - GFF2156 0.69 +0.8
210,446 - GFF2156 0.69 -0.7
210,446 - GFF2156 0.69 +0.9
210,502 + GFF2156 0.73 +0.3
210,502 + GFF2156 0.73 +1.8
210,502 + GFF2156 0.73 +0.6
210,503 - GFF2156 0.73 +0.3
210,503 - GFF2156 0.73 -0.5
210,503 - GFF2156 0.73 -1.0
210,503 - GFF2156 0.73 -0.5
210,503 - GFF2156 0.73 -1.2
210,503 - GFF2156 0.73 -0.2
210,503 - GFF2156 0.73 -0.4
210,503 - GFF2156 0.73 +1.8
210,503 - GFF2156 0.73 +0.6
210,503 - GFF2156 0.73 +0.0
210,780 + +1.4
210,781 - +1.8
210,781 - +0.2
210,817 + -1.2
210,817 + -0.2
210,818 - -0.0
210,877 + -0.4
210,877 + +0.0
210,877 + -0.3
210,877 + -0.5
210,877 + -0.3
210,877 + +0.7
210,878 - -0.3
210,878 - -1.0
210,878 - -0.6
210,911 + -0.5
210,911 + -1.5
210,911 + -0.5
210,911 + -0.4
210,911 + -0.3
210,911 + -0.5
210,912 - -0.5
210,912 - -0.6
210,912 - -0.3
210,912 - -0.2
210,912 - -0.5
211,005 + GFF2157 0.15 -1.5
211,005 + GFF2157 0.15 +0.6
211,005 + GFF2157 0.15 -0.7
211,006 - GFF2157 0.16 +0.0
211,006 - GFF2157 0.16 +0.4
211,224 + GFF2157 0.52 -0.6
211,224 + GFF2157 0.52 -0.5
211,224 + GFF2157 0.52 -0.4
211,224 + GFF2157 0.52 +0.6
211,225 - GFF2157 0.52 -0.1
211,225 - GFF2157 0.52 -0.1
211,225 - GFF2157 0.52 -1.0
211,335 + GFF2157 0.70 -0.4
211,443 + GFF2157 0.89 -0.0
211,443 + GFF2157 0.89 -0.8
211,443 + GFF2157 0.89 -2.2
211,443 + GFF2157 0.89 +0.2

Or see this region's nucleotide sequence