Strain Fitness in Variovorax sp. SCN45 around GFF1651

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1650 and GFF1651 are separated by 96 nucleotidesGFF1651 and GFF1652 are separated by 29 nucleotides GFF1650 - NmrA-like, at 289,696 to 290,781 GFF1650 GFF1651 - Transcriptional regulator, AcrR family, at 290,878 to 291,465 GFF1651 GFF1652 - Uncharacterized MFS-type transporter, at 291,495 to 292,736 GFF1652 Position (kb) 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 289.975 kb on + strand, within GFF1650at 289.975 kb on + strand, within GFF1650at 289.975 kb on + strand, within GFF1650at 289.975 kb on + strand, within GFF1650at 289.976 kb on - strand, within GFF1650at 289.993 kb on + strand, within GFF1650at 289.993 kb on + strand, within GFF1650at 289.994 kb on - strand, within GFF1650at 289.994 kb on - strand, within GFF1650at 290.047 kb on + strand, within GFF1650at 290.048 kb on - strand, within GFF1650at 290.095 kb on + strand, within GFF1650at 290.095 kb on + strand, within GFF1650at 290.152 kb on + strand, within GFF1650at 290.188 kb on + strand, within GFF1650at 290.188 kb on + strand, within GFF1650at 290.189 kb on - strand, within GFF1650at 290.189 kb on - strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.315 kb on - strand, within GFF1650at 290.315 kb on - strand, within GFF1650at 290.315 kb on - strand, within GFF1650at 290.389 kb on + strand, within GFF1650at 290.390 kb on - strand, within GFF1650at 290.441 kb on - strand, within GFF1650at 290.460 kb on + strand, within GFF1650at 290.460 kb on + strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.464 kb on + strand, within GFF1650at 290.465 kb on - strand, within GFF1650at 290.510 kb on - strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.779 kb on + strandat 290.779 kb on + strandat 290.779 kb on + strandat 290.779 kb on + strandat 290.811 kb on + strandat 290.885 kb on - strandat 290.960 kb on + strand, within GFF1651at 290.961 kb on - strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.154 kb on + strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.320 kb on + strand, within GFF1651at 291.321 kb on - strand, within GFF1651at 291.321 kb on - strand, within GFF1651at 291.403 kb on + strand, within GFF1651at 291.404 kb on - strand, within GFF1651at 291.463 kb on + strandat 291.463 kb on + strandat 291.463 kb on + strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.685 kb on - strand, within GFF1652at 291.822 kb on + strand, within GFF1652at 291.823 kb on - strand, within GFF1652at 291.911 kb on - strand, within GFF1652at 291.947 kb on - strand, within GFF1652at 292.167 kb on + strand, within GFF1652at 292.168 kb on - strand, within GFF1652at 292.168 kb on - strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.316 kb on - strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.363 kb on + strand, within GFF1652at 292.364 kb on - strand, within GFF1652at 292.364 kb on - strand, within GFF1652

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
289,975 + GFF1650 0.26 +0.5
289,975 + GFF1650 0.26 -0.6
289,975 + GFF1650 0.26 -0.6
289,975 + GFF1650 0.26 +0.7
289,976 - GFF1650 0.26 +0.1
289,993 + GFF1650 0.27 -0.3
289,993 + GFF1650 0.27 -0.5
289,994 - GFF1650 0.27 +1.4
289,994 - GFF1650 0.27 +1.5
290,047 + GFF1650 0.32 +1.8
290,048 - GFF1650 0.32 -0.4
290,095 + GFF1650 0.37 -0.1
290,095 + GFF1650 0.37 +0.5
290,152 + GFF1650 0.42 -0.4
290,188 + GFF1650 0.45 -1.5
290,188 + GFF1650 0.45 -0.1
290,189 - GFF1650 0.45 +0.2
290,189 - GFF1650 0.45 +1.3
290,314 + GFF1650 0.57 -0.2
290,314 + GFF1650 0.57 +1.0
290,314 + GFF1650 0.57 -1.1
290,314 + GFF1650 0.57 -1.5
290,314 + GFF1650 0.57 -0.6
290,315 - GFF1650 0.57 -0.1
290,315 - GFF1650 0.57 -0.6
290,315 - GFF1650 0.57 +0.8
290,389 + GFF1650 0.64 +0.2
290,390 - GFF1650 0.64 +0.8
290,441 - GFF1650 0.69 -1.1
290,460 + GFF1650 0.70 -0.3
290,460 + GFF1650 0.70 +0.1
290,461 - GFF1650 0.70 -0.7
290,461 - GFF1650 0.70 -2.8
290,461 - GFF1650 0.70 -0.5
290,461 - GFF1650 0.70 -1.6
290,461 - GFF1650 0.70 -1.0
290,464 + GFF1650 0.71 -0.1
290,465 - GFF1650 0.71 -0.4
290,510 - GFF1650 0.75 -1.4
290,605 + GFF1650 0.84 +0.1
290,605 + GFF1650 0.84 +0.1
290,605 + GFF1650 0.84 +0.2
290,605 + GFF1650 0.84 +0.5
290,606 - GFF1650 0.84 -1.7
290,606 - GFF1650 0.84 -0.3
290,606 - GFF1650 0.84 +0.3
290,606 - GFF1650 0.84 +0.9
290,779 + -0.4
290,779 + -0.2
290,779 + -0.1
290,779 + +0.3
290,811 + -0.2
290,885 - -1.4
290,960 + GFF1651 0.14 -0.1
290,961 - GFF1651 0.14 +0.8
291,019 + GFF1651 0.24 -0.6
291,019 + GFF1651 0.24 -1.9
291,019 + GFF1651 0.24 -0.3
291,154 + GFF1651 0.47 +0.4
291,155 - GFF1651 0.47 -0.1
291,155 - GFF1651 0.47 -0.8
291,155 - GFF1651 0.47 +0.1
291,320 + GFF1651 0.75 -0.2
291,321 - GFF1651 0.75 -0.2
291,321 - GFF1651 0.75 -0.4
291,403 + GFF1651 0.89 +0.9
291,404 - GFF1651 0.89 -0.1
291,463 + -0.6
291,463 + +0.0
291,463 + -0.2
291,464 - -0.7
291,464 - +0.8
291,464 - +2.8
291,464 - +0.2
291,496 + +0.5
291,496 + -0.7
291,496 + -0.5
291,496 + +0.8
291,497 - -0.5
291,497 - -0.1
291,497 - -0.6
291,685 - GFF1652 0.15 -0.4
291,822 + GFF1652 0.26 +0.1
291,823 - GFF1652 0.26 -0.4
291,911 - GFF1652 0.33 -1.0
291,947 - GFF1652 0.36 +1.0
292,167 + GFF1652 0.54 +0.0
292,168 - GFF1652 0.54 +1.5
292,168 - GFF1652 0.54 -0.7
292,207 + GFF1652 0.57 -0.1
292,207 + GFF1652 0.57 +0.4
292,207 + GFF1652 0.57 -0.1
292,207 + GFF1652 0.57 +1.1
292,207 + GFF1652 0.57 -0.9
292,207 + GFF1652 0.57 +1.0
292,208 - GFF1652 0.57 -0.2
292,208 - GFF1652 0.57 -1.3
292,208 - GFF1652 0.57 -1.2
292,208 - GFF1652 0.57 +0.2
292,208 - GFF1652 0.57 +0.4
292,208 - GFF1652 0.57 +0.2
292,208 - GFF1652 0.57 +1.8
292,316 - GFF1652 0.66 -0.3
292,342 + GFF1652 0.68 -0.7
292,342 + GFF1652 0.68 -1.1
292,342 + GFF1652 0.68 -0.2
292,342 + GFF1652 0.68 +0.6
292,342 + GFF1652 0.68 -1.5
292,342 + GFF1652 0.68 -0.7
292,342 + GFF1652 0.68 -0.8
292,342 + GFF1652 0.68 -0.5
292,343 - GFF1652 0.68 -0.5
292,343 - GFF1652 0.68 +0.5
292,343 - GFF1652 0.68 -0.7
292,343 - GFF1652 0.68 +0.8
292,343 - GFF1652 0.68 -1.2
292,343 - GFF1652 0.68 -0.5
292,343 - GFF1652 0.68 -0.3
292,343 - GFF1652 0.68 +0.3
292,363 + GFF1652 0.70 -1.2
292,364 - GFF1652 0.70 +0.2
292,364 - GFF1652 0.70 -0.4

Or see this region's nucleotide sequence