Strain Fitness in Variovorax sp. SCN45 around GFF1460

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
50,967	+		GFF1458	0.69	+0.1
50,968	-		GFF1458	0.70	-0.3
50,968	-		GFF1458	0.70	+0.3
51,000	+				-0.7
51,000	+				-1.8
51,020	+				+0.1
51,021	-				-0.6
51,021	-				-0.8
51,058	-				-0.9
51,095	-				+0.2
51,200	+		GFF1459	0.18	-1.4
51,200	+		GFF1459	0.18	+0.7
51,201	-		GFF1459	0.18	+0.5
51,201	-		GFF1459	0.18	-0.1
51,301	+		GFF1459	0.34	-0.1
51,301	+		GFF1459	0.34	-0.1
51,302	-		GFF1459	0.34	-0.2
51,355	+		GFF1459	0.42	-0.4
51,356	-		GFF1459	0.42	+0.1
51,379	+		GFF1459	0.46	-0.5
51,394	+		GFF1459	0.48	-0.6
51,415	+		GFF1459	0.51	+0.2
51,415	+		GFF1459	0.51	+0.3
51,544	+		GFF1459	0.71	+1.0
51,544	+		GFF1459	0.71	-0.6
51,544	+		GFF1459	0.71	-0.2
51,545	-		GFF1459	0.71	-0.6
51,545	-		GFF1459	0.71	+0.7
52,199	-		GFF1460	0.47	+0.7
52,297	+		GFF1460	0.60	+0.9
52,298	-		GFF1460	0.61	+2.4
52,298	-		GFF1460	0.61	+0.6
52,405	+		GFF1460	0.75	-0.2
52,421	-		GFF1460	0.77	+0.3
52,421	-		GFF1460	0.77	+0.3
52,653	+				-1.1
52,653	+				+0.7
52,791	+		GFF1461	0.24	-0.7
52,792	-		GFF1461	0.24	-0.2
52,792	-		GFF1461	0.24	-0.6
52,792	-		GFF1461	0.24	-0.3
52,947	+		GFF1461	0.44	+0.1
52,948	-		GFF1461	0.44	-0.7
52,979	+		GFF1461	0.48	-0.2
53,130	+		GFF1461	0.66	-0.8
53,130	+		GFF1461	0.66	+0.2
53,131	-		GFF1461	0.66	-0.2
53,131	-		GFF1461	0.66	-0.8
53,131	-		GFF1461	0.66	-0.2
53,510	+				+0.0