Strain Fitness in Variovorax sp. SCN45 around GFF1267

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
582,820	+		GFF1266	0.76	-0.8
582,820	+		GFF1266	0.76	+1.4
582,821	-		GFF1266	0.76	-0.4
582,821	-		GFF1266	0.76	-0.1
582,900	+		GFF1266	0.80	-0.8
582,901	-		GFF1266	0.80	-0.4
582,901	-		GFF1266	0.80	-2.0
582,901	-		GFF1266	0.80	-0.6
582,957	+		GFF1266	0.84	-0.1
582,958	-		GFF1266	0.84	-0.2
582,958	-		GFF1266	0.84	-1.7
583,051	-		GFF1266	0.89	-0.0
583,179	+				-0.4
583,179	+				-1.9
583,180	-				+1.4
583,782	-		GFF1267	0.52	-0.8
583,997	+		GFF1267	0.74	-1.6
584,298	-				-0.6
584,298	-				-0.2
584,340	-				+0.0
584,355	+				-0.3
584,356	-				-0.2
584,804	+		GFF1268	0.31	-1.6
584,804	+		GFF1268	0.31	-0.5
585,116	-		GFF1268	0.54	-0.6
585,116	-		GFF1268	0.54	+0.2
585,116	-		GFF1268	0.54	-0.0
585,118	+		GFF1268	0.54	+0.7
585,118	+		GFF1268	0.54	-0.7
585,118	+		GFF1268	0.54	-0.2
585,157	+		GFF1268	0.57	-0.6