Strain Fitness in Variovorax sp. SCN45 around GFF741

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF740 and GFF741 are separated by 38 nucleotidesGFF741 and GFF742 are separated by 28 nucleotides GFF740 - Uncharacterized protein YdcJ, at 2,713 to 4,092 GFF740 GFF741 - Transcriptional regulator, LysR family, at 4,131 to 5,024 GFF741 GFF742 - D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2), at 5,053 to 6,471 GFF742 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 3.316 kb on + strand, within GFF740at 3.316 kb on + strand, within GFF740at 3.316 kb on + strand, within GFF740at 3.316 kb on + strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.429 kb on + strand, within GFF740at 3.429 kb on + strand, within GFF740at 3.429 kb on + strand, within GFF740at 3.430 kb on - strand, within GFF740at 3.430 kb on - strand, within GFF740at 3.640 kb on + strand, within GFF740at 3.641 kb on - strand, within GFF740at 3.641 kb on - strand, within GFF740at 3.700 kb on + strand, within GFF740at 3.701 kb on - strand, within GFF740at 3.785 kb on - strand, within GFF740at 3.889 kb on + strand, within GFF740at 3.889 kb on + strand, within GFF740at 3.889 kb on + strand, within GFF740at 3.890 kb on - strand, within GFF740at 3.890 kb on - strand, within GFF740at 3.890 kb on - strand, within GFF740at 3.890 kb on - strand, within GFF740at 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.961 kb on + strandat 3.962 kb on - strandat 3.962 kb on - strandat 4.033 kb on + strandat 4.034 kb on - strandat 4.034 kb on - strandat 4.034 kb on - strandat 4.090 kb on + strandat 4.090 kb on + strandat 4.091 kb on - strandat 4.091 kb on - strandat 4.091 kb on - strandat 4.091 kb on - strandat 4.091 kb on - strandat 4.091 kb on - strandat 4.235 kb on + strand, within GFF741at 4.235 kb on + strand, within GFF741at 4.235 kb on + strand, within GFF741at 4.236 kb on - strand, within GFF741at 4.344 kb on + strand, within GFF741at 4.344 kb on + strand, within GFF741at 4.345 kb on - strand, within GFF741at 4.345 kb on - strand, within GFF741at 4.345 kb on - strand, within GFF741at 4.345 kb on - strand, within GFF741at 4.345 kb on - strand, within GFF741at 4.345 kb on - strand, within GFF741at 4.345 kb on - strand, within GFF741at 4.378 kb on + strand, within GFF741at 4.378 kb on + strand, within GFF741at 4.379 kb on - strand, within GFF741at 4.935 kb on + strandat 4.935 kb on + strandat 4.935 kb on + strandat 4.935 kb on + strandat 4.935 kb on + strandat 4.935 kb on + strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.936 kb on - strandat 4.939 kb on - strandat 4.939 kb on - strandat 5.891 kb on - strand, within GFF742

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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3,316 + GFF740 0.44 -0.5
3,316 + GFF740 0.44 -1.7
3,316 + GFF740 0.44 -0.3
3,316 + GFF740 0.44 -1.2
3,317 - GFF740 0.44 -0.7
3,317 - GFF740 0.44 +0.8
3,317 - GFF740 0.44 +0.4
3,317 - GFF740 0.44 -0.3
3,317 - GFF740 0.44 +1.0
3,317 - GFF740 0.44 -0.4
3,429 + GFF740 0.52 -0.3
3,429 + GFF740 0.52 +1.2
3,429 + GFF740 0.52 +0.4
3,430 - GFF740 0.52 -2.7
3,430 - GFF740 0.52 -0.1
3,640 + GFF740 0.67 +0.5
3,641 - GFF740 0.67 +0.4
3,641 - GFF740 0.67 +0.1
3,700 + GFF740 0.72 +0.8
3,701 - GFF740 0.72 +0.0
3,785 - GFF740 0.78 -0.3
3,889 + GFF740 0.85 -1.2
3,889 + GFF740 0.85 -0.6
3,889 + GFF740 0.85 -1.0
3,890 - GFF740 0.85 -1.8
3,890 - GFF740 0.85 -0.8
3,890 - GFF740 0.85 -0.5
3,890 - GFF740 0.85 -0.1
3,961 + -0.4
3,961 + -0.4
3,961 + -0.4
3,961 + -1.5
3,961 + -0.1
3,961 + +0.5
3,961 + -0.7
3,961 + +0.3
3,961 + +1.2
3,961 + -0.1
3,962 - -0.7
3,962 - -0.2
4,033 + +1.6
4,034 - -0.1
4,034 - -0.8
4,034 - -0.8
4,090 + -1.1
4,090 + +0.2
4,091 - -0.2
4,091 - -0.3
4,091 - +0.9
4,091 - +0.2
4,091 - -0.1
4,091 - -0.2
4,235 + GFF741 0.12 -0.3
4,235 + GFF741 0.12 +0.5
4,235 + GFF741 0.12 -1.3
4,236 - GFF741 0.12 +1.0
4,344 + GFF741 0.24 -0.0
4,344 + GFF741 0.24 -2.1
4,345 - GFF741 0.24 -1.7
4,345 - GFF741 0.24 -1.5
4,345 - GFF741 0.24 -0.8
4,345 - GFF741 0.24 +0.0
4,345 - GFF741 0.24 -0.6
4,345 - GFF741 0.24 +0.9
4,345 - GFF741 0.24 -1.4
4,378 + GFF741 0.28 -0.9
4,378 + GFF741 0.28 -1.1
4,379 - GFF741 0.28 +0.1
4,935 + -0.1
4,935 + +0.3
4,935 + +0.1
4,935 + +0.5
4,935 + +0.1
4,935 + -0.2
4,936 - -1.6
4,936 - +1.1
4,936 - -0.0
4,936 - -0.1
4,936 - -0.2
4,936 - +0.6
4,936 - -0.7
4,936 - -0.2
4,936 - -0.0
4,936 - -0.6
4,936 - -0.2
4,939 - -0.9
4,939 - -0.4
5,891 - GFF742 0.59 +1.0

Or see this region's nucleotide sequence