Strain Fitness in Variovorax sp. SCN45 around GFF695

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF693 and GFF694 are separated by 18 nucleotidesGFF694 and GFF695 overlap by 4 nucleotidesGFF695 and GFF696 are separated by 164 nucleotides GFF693 - BUG/TctC family periplasmic protein, at 748,310 to 749,326 GFF693 GFF694 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 749,345 to 750,208 GFF694 GFF695 - Cytochrome B561, at 750,205 to 750,777 GFF695 GFF696 - Glycosyl transferase, group 2 family, at 750,942 to 752,372 GFF696 Position (kb) 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 749.216 kb on + strand, within GFF693at 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.394 kb on + strandat 749.394 kb on + strandat 749.394 kb on + strandat 749.395 kb on - strandat 749.395 kb on - strandat 749.748 kb on - strand, within GFF694at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.500 kb on + strand, within GFF695at 750.500 kb on + strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.549 kb on - strand, within GFF695at 750.549 kb on - strand, within GFF695at 750.675 kb on - strand, within GFF695at 750.758 kb on + strandat 750.758 kb on + strandat 750.759 kb on - strandat 750.759 kb on - strandat 750.759 kb on - strandat 750.876 kb on + strandat 750.876 kb on + strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.234 kb on + strand, within GFF696at 751.235 kb on - strand, within GFF696at 751.235 kb on - strand, within GFF696at 751.405 kb on - strand, within GFF696at 751.405 kb on - strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
749,216 + GFF693 0.89 -0.6
749,270 + +0.3
749,270 + +2.0
749,270 + -0.8
749,270 + -0.3
749,270 + -0.5
749,270 + +0.6
749,270 + -0.0
749,270 + +0.2
749,270 + -0.3
749,271 - -0.1
749,271 - -0.0
749,271 - -1.5
749,271 - -0.5
749,271 - +0.4
749,394 + -0.8
749,394 + -1.1
749,394 + -0.4
749,395 - -0.5
749,395 - -1.9
749,748 - GFF694 0.47 +0.1
750,302 + GFF695 0.17 +0.2
750,302 + GFF695 0.17 -2.4
750,302 + GFF695 0.17 -0.7
750,303 - GFF695 0.17 -1.1
750,303 - GFF695 0.17 -2.0
750,311 + GFF695 0.18 -0.6
750,311 + GFF695 0.18 +0.9
750,311 + GFF695 0.18 -1.3
750,311 + GFF695 0.18 -1.0
750,311 + GFF695 0.18 -0.8
750,312 - GFF695 0.19 +0.3
750,312 - GFF695 0.19 -1.8
750,312 - GFF695 0.19 -1.0
750,312 - GFF695 0.19 -0.5
750,422 + GFF695 0.38 +0.1
750,422 + GFF695 0.38 -1.0
750,422 + GFF695 0.38 -0.5
750,422 + GFF695 0.38 -0.4
750,422 + GFF695 0.38 -0.8
750,422 + GFF695 0.38 -1.7
750,422 + GFF695 0.38 +0.2
750,423 - GFF695 0.38 +0.3
750,423 - GFF695 0.38 +1.3
750,423 - GFF695 0.38 +1.1
750,423 - GFF695 0.38 +0.1
750,423 - GFF695 0.38 +1.3
750,423 - GFF695 0.38 +0.5
750,423 - GFF695 0.38 -1.3
750,423 - GFF695 0.38 -2.1
750,423 - GFF695 0.38 +0.7
750,423 - GFF695 0.38 -1.1
750,423 - GFF695 0.38 +0.3
750,423 - GFF695 0.38 -0.1
750,423 - GFF695 0.38 -0.6
750,500 + GFF695 0.51 +0.6
750,500 + GFF695 0.51 -0.3
750,501 - GFF695 0.52 -0.4
750,501 - GFF695 0.52 -0.1
750,501 - GFF695 0.52 +0.5
750,548 + GFF695 0.60 -1.3
750,548 + GFF695 0.60 -1.1
750,548 + GFF695 0.60 -0.5
750,549 - GFF695 0.60 -0.7
750,549 - GFF695 0.60 -0.4
750,675 - GFF695 0.82 -0.5
750,758 + -1.3
750,758 + -1.3
750,759 - -1.3
750,759 - -0.4
750,759 - +0.1
750,876 + -1.4
750,876 + -0.5
750,877 - -0.5
750,877 - +0.1
750,877 - -1.4
750,877 - +0.5
750,877 - +0.2
750,877 - +0.3
750,877 - -1.8
751,086 + GFF696 0.10 -0.1
751,086 + GFF696 0.10 -0.1
751,086 + GFF696 0.10 +0.4
751,086 + GFF696 0.10 +0.7
751,086 + GFF696 0.10 +1.2
751,086 + GFF696 0.10 -0.0
751,086 + GFF696 0.10 -0.1
751,086 + GFF696 0.10 +0.0
751,086 + GFF696 0.10 -1.0
751,086 + GFF696 0.10 -0.8
751,086 + GFF696 0.10 +0.3
751,086 + GFF696 0.10 -1.5
751,086 + GFF696 0.10 +0.6
751,087 - GFF696 0.10 -0.8
751,087 - GFF696 0.10 +0.3
751,087 - GFF696 0.10 -0.3
751,087 - GFF696 0.10 -0.1
751,087 - GFF696 0.10 -0.8
751,087 - GFF696 0.10 +0.2
751,087 - GFF696 0.10 -1.7
751,087 - GFF696 0.10 -0.1
751,087 - GFF696 0.10 -0.7
751,087 - GFF696 0.10 +1.6
751,087 - GFF696 0.10 +1.3
751,095 + GFF696 0.11 -0.3
751,095 + GFF696 0.11 -0.1
751,095 + GFF696 0.11 +1.3
751,095 + GFF696 0.11 -0.3
751,096 - GFF696 0.11 -1.3
751,096 - GFF696 0.11 -0.2
751,096 - GFF696 0.11 -0.0
751,096 - GFF696 0.11 -0.3
751,234 + GFF696 0.20 -0.0
751,235 - GFF696 0.20 +0.3
751,235 - GFF696 0.20 -0.7
751,405 - GFF696 0.32 -0.1
751,405 - GFF696 0.32 -0.3
751,638 + GFF696 0.49 -0.3
751,638 + GFF696 0.49 +0.2
751,638 + GFF696 0.49 -0.0
751,638 + GFF696 0.49 -0.8
751,639 - GFF696 0.49 -0.3
751,639 - GFF696 0.49 +0.3
751,639 - GFF696 0.49 +1.6
751,639 - GFF696 0.49 -0.7
751,639 - GFF696 0.49 -0.2
751,644 + GFF696 0.49 -0.1
751,644 + GFF696 0.49 +0.2
751,644 + GFF696 0.49 -0.6
751,644 + GFF696 0.49 -0.8
751,644 + GFF696 0.49 -1.6
751,644 + GFF696 0.49 -0.5
751,644 + GFF696 0.49 -0.1
751,644 + GFF696 0.49 -0.6
751,644 + GFF696 0.49 -0.5
751,644 + GFF696 0.49 -2.8
751,644 + GFF696 0.49 -0.2
751,645 - GFF696 0.49 -0.1
751,645 - GFF696 0.49 -0.2
751,645 - GFF696 0.49 -0.6
751,645 - GFF696 0.49 -1.0
751,645 - GFF696 0.49 -0.1
751,645 - GFF696 0.49 -0.2
751,645 - GFF696 0.49 +1.3
751,645 - GFF696 0.49 -0.1
751,645 - GFF696 0.49 -0.0
751,645 - GFF696 0.49 -0.4
751,645 - GFF696 0.49 +0.4

Or see this region's nucleotide sequence