Strain Fitness in Variovorax sp. SCN45 around GFF6898

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
30,209	+				-0.8
30,209	+				-0.2
30,209	+				-1.7
30,209	+				+1.4
30,210	-				-0.7
30,210	-				-2.4
30,210	-				-0.8
30,285	+				-0.6
30,286	-				-0.2
30,286	-				-0.4
30,286	-				-0.8
30,295	+				-0.8
30,295	+				-1.8
30,295	+				-0.8
30,296	-				-0.8
30,296	-				+0.6
30,296	-				+0.3
30,296	-				-0.1
30,296	-				+0.2
30,296	-				+1.5
30,296	-				-1.6
30,296	-				-0.8
30,298	-				+0.2
30,298	-				-1.3
30,315	+				-2.1
30,315	+				-1.7
30,315	+				-1.7
30,315	+				-1.0
30,315	+				-1.0
30,316	-				-0.5
30,316	-				-0.8
30,338	-				-2.2
30,339	+				-1.7
30,339	+				-1.4
30,339	+				-0.7
30,339	+				-0.8
30,340	-				-0.6
30,340	-				+0.2
30,340	-				-1.4
30,340	-				-0.2
30,340	-				-0.2
30,340	-				-0.7
30,340	-				+3.8
30,340	-				-1.2
30,343	+				-1.7
30,343	+				-0.8
30,343	+				-0.9
30,344	-				-1.5
30,344	-				-0.4
30,344	-				-1.5
30,369	+				-1.6
30,369	+				-0.6
30,369	+				-0.3
30,371	+				+0.6
30,371	+				+1.5
30,371	+				-0.9
30,372	-				-1.7
30,372	-				-0.4
30,446	+				-0.2
30,446	+				-2.3
30,663	+				+0.4
30,663	+				-0.0
30,663	+				+0.8
30,663	+				-0.2
30,663	+				-0.5
30,663	+				-2.3
30,663	+				+1.2
30,663	+				-0.1
30,663	+				+0.1
30,663	+				-0.2
30,664	-				+0.1
30,664	-				+0.4
30,664	-				+0.1
30,664	-				+0.5
30,809	+		GFF6898	0.13	+0.5
30,885	+		GFF6898	0.16	+0.1
30,885	+		GFF6898	0.16	+1.3
30,885	+		GFF6898	0.16	+0.4
30,885	+		GFF6898	0.16	-0.2
30,886	-		GFF6898	0.16	-0.7
30,886	-		GFF6898	0.16	+0.5
31,053	+		GFF6898	0.22	-0.5
31,053	+		GFF6898	0.22	+1.1
31,053	+		GFF6898	0.22	-0.8
31,054	-		GFF6898	0.23	+1.1
31,054	-		GFF6898	0.23	+1.0
31,054	-		GFF6898	0.23	-1.8
31,054	-		GFF6898	0.23	+0.1
31,054	-		GFF6898	0.23	-0.4
31,054	-		GFF6898	0.23	-0.4
31,054	-		GFF6898	0.23	-2.9
31,167	+		GFF6898	0.27	+0.8
31,168	-		GFF6898	0.27	-0.6
31,581	+		GFF6898	0.43	-0.1
31,687	-		GFF6898	0.47	+1.0
31,687	-		GFF6898	0.47	+0.6
31,740	+		GFF6898	0.49	-0.1
31,740	+		GFF6898	0.49	+0.4
31,740	+		GFF6898	0.49	-0.3
31,740	+		GFF6898	0.49	-1.3
31,740	+		GFF6898	0.49	+0.2
31,740	+		GFF6898	0.49	-0.2
31,740	+		GFF6898	0.49	-0.1
31,740	+		GFF6898	0.49	+0.2
31,741	-		GFF6898	0.49	-1.0
31,741	-		GFF6898	0.49	-0.2
31,741	-		GFF6898	0.49	+1.0
31,741	-		GFF6898	0.49	+0.1
31,741	-		GFF6898	0.49	-0.7
31,741	-		GFF6898	0.49	-1.1
31,741	-		GFF6898	0.49	+1.5
31,741	-		GFF6898	0.49	-0.2
31,755	+		GFF6898	0.49	-0.6
31,755	+		GFF6898	0.49	-0.2
31,755	+		GFF6898	0.49	+0.7
31,755	+		GFF6898	0.49	-0.0
31,755	+		GFF6898	0.49	-0.4
31,755	+		GFF6898	0.49	+1.8
31,755	+		GFF6898	0.49	+0.0
31,755	+		GFF6898	0.49	-1.7
31,755	+		GFF6898	0.49	+0.1
31,755	+		GFF6898	0.49	+0.7
31,755	+		GFF6898	0.49	-0.0
31,756	-		GFF6898	0.49	+0.2
31,756	-		GFF6898	0.49	-0.1
31,756	-		GFF6898	0.49	-0.1
31,761	+		GFF6898	0.49	+0.1
31,761	+		GFF6898	0.49	-0.2
31,761	+		GFF6898	0.49	+2.8
31,761	+		GFF6898	0.49	-0.7
31,762	-		GFF6898	0.49	+0.6
31,813	-		GFF6898	0.51	+0.4
31,872	+		GFF6898	0.54	-0.2
31,872	+		GFF6898	0.54	-1.0
31,872	+		GFF6898	0.54	-0.9
31,873	-		GFF6898	0.54	-0.2
31,873	-		GFF6898	0.54	+0.9
31,873	-		GFF6898	0.54	+0.7
31,873	-		GFF6898	0.54	-0.0
31,873	-		GFF6898	0.54	-0.7
31,911	+		GFF6898	0.55	-1.4
31,911	+		GFF6898	0.55	+1.1
31,911	+		GFF6898	0.55	-1.0
31,911	+		GFF6898	0.55	+0.6
31,912	-		GFF6898	0.55	+0.3
31,912	-		GFF6898	0.55	+0.4
31,912	-		GFF6898	0.55	+0.2
31,912	-		GFF6898	0.55	+0.7
31,983	+		GFF6898	0.58	+0.6
31,983	+		GFF6898	0.58	-0.0
31,984	-		GFF6898	0.58	+0.5
31,984	-		GFF6898	0.58	-0.1
31,984	-		GFF6898	0.58	+0.9
31,984	-		GFF6898	0.58	-0.3
31,984	-		GFF6898	0.58	-2.2
31,989	+		GFF6898	0.58	-0.3
31,989	+		GFF6898	0.58	-1.5
31,989	+		GFF6898	0.58	+1.3
31,990	-		GFF6898	0.58	+0.4
31,990	-		GFF6898	0.58	-1.0
31,990	-		GFF6898	0.58	-0.9
31,990	-		GFF6898	0.58	+0.3
31,990	-		GFF6898	0.58	-0.5
31,990	-		GFF6898	0.58	+0.7
32,073	+		GFF6898	0.61	-0.8
32,073	+		GFF6898	0.61	+0.2
32,073	+		GFF6898	0.61	-0.7
32,073	+		GFF6898	0.61	+0.6
32,074	-		GFF6898	0.61	-1.2
32,343	+		GFF6898	0.71	+0.2
32,343	+		GFF6898	0.71	+0.2
32,343	+		GFF6898	0.71	-0.6
32,343	+		GFF6898	0.71	+1.1
32,343	+		GFF6898	0.71	-0.4
32,344	-		GFF6898	0.72	-0.3
32,344	-		GFF6898	0.72	+1.3
32,344	-		GFF6898	0.72	-1.1
32,344	-		GFF6898	0.72	+0.1
32,344	-		GFF6898	0.72	+1.5
32,344	-		GFF6898	0.72	-0.3
32,541	+		GFF6898	0.79	-0.5
32,541	+		GFF6898	0.79	+0.2
32,541	+		GFF6898	0.79	+0.6
32,541	+		GFF6898	0.79	+0.3
32,541	+		GFF6898	0.79	+1.8
32,541	+		GFF6898	0.79	-1.3
32,542	-		GFF6898	0.79	-1.2
32,542	-		GFF6898	0.79	+1.1
32,542	-		GFF6898	0.79	+0.4
32,542	-		GFF6898	0.79	-0.7
32,542	-		GFF6898	0.79	+0.4
32,542	-		GFF6898	0.79	-1.0
32,542	-		GFF6898	0.79	-0.8
32,622	+		GFF6898	0.82	-1.2
32,622	+		GFF6898	0.82	+0.2
32,623	-		GFF6898	0.82	-0.5
32,623	-		GFF6898	0.82	+0.9
32,775	-		GFF6898	0.88	-0.9
32,775	-		GFF6898	0.88	+0.0
32,802	+		GFF6898	0.89	+0.4
32,802	+		GFF6898	0.89	+0.2
32,802	+		GFF6898	0.89	-0.8
32,803	-		GFF6898	0.89	-0.5
32,884	+				+0.2
32,916	+				+0.2
32,916	+				-0.1
32,917	-				-0.3
32,917	-				+0.1
32,917	-				-0.0
32,917	-				+0.7
32,917	-				+0.5
32,961	+				-2.0
33,030	+				+1.0
33,030	+				+0.2
33,030	+				-0.4
33,031	-				-0.4
33,031	-				-0.2
33,031	-				-0.5
33,356	+		GFF6899	0.13	+1.8
33,461	+		GFF6899	0.18	+0.8
33,461	+		GFF6899	0.18	-0.6
33,461	+		GFF6899	0.18	+0.6
33,462	-		GFF6899	0.18	-0.7
33,462	-		GFF6899	0.18	+0.0
33,462	-		GFF6899	0.18	+1.1
33,462	-		GFF6899	0.18	-0.8
33,462	-		GFF6899	0.18	-0.2
33,462	-		GFF6899	0.18	+0.1
33,462	-		GFF6899	0.18	-0.6
33,491	+		GFF6899	0.19	-1.1
33,491	+		GFF6899	0.19	+0.1
33,491	+		GFF6899	0.19	-0.5
33,491	+		GFF6899	0.19	-0.0
33,492	-		GFF6899	0.19	+1.4
33,492	-		GFF6899	0.19	-1.2
33,492	-		GFF6899	0.19	-1.2
33,497	+		GFF6899	0.20	-0.4
33,497	+		GFF6899	0.20	-0.2
33,497	+		GFF6899	0.20	-1.3
33,497	+		GFF6899	0.20	-0.2
33,497	+		GFF6899	0.20	+0.2
33,497	+		GFF6899	0.20	+0.6
33,498	-		GFF6899	0.20	-0.2
33,498	-		GFF6899	0.20	+0.8
33,498	-		GFF6899	0.20	-0.3
33,498	-		GFF6899	0.20	+0.8
33,726	-		GFF6899	0.31	-1.2
33,747	-		GFF6899	0.32	-1.0
33,747	-		GFF6899	0.32	+1.8
33,764	+		GFF6899	0.32	-0.2
33,764	+		GFF6899	0.32	+1.2
33,764	+		GFF6899	0.32	-0.2
33,764	+		GFF6899	0.32	+0.2
33,764	+		GFF6899	0.32	-1.1
33,764	+		GFF6899	0.32	-0.2
33,764	+		GFF6899	0.32	+1.4
33,764	+		GFF6899	0.32	-1.5
33,764	+		GFF6899	0.32	-1.1
33,765	-		GFF6899	0.33	-1.2
33,765	-		GFF6899	0.33	+0.4
33,765	-		GFF6899	0.33	-0.0
33,765	-		GFF6899	0.33	+0.2
33,765	-		GFF6899	0.33	-0.9
33,863	+		GFF6899	0.37	-0.7
33,864	-		GFF6899	0.37	-0.5
33,864	-		GFF6899	0.37	+1.1
33,864	-		GFF6899	0.37	+0.2
33,864	-		GFF6899	0.37	-0.7
33,864	-		GFF6899	0.37	-1.0
33,864	-		GFF6899	0.37	-0.4
33,984	-		GFF6899	0.43	-0.2
33,984	-		GFF6899	0.43	-0.5
34,004	+		GFF6899	0.44	-0.9
34,005	-		GFF6899	0.44	-1.6
34,079	+		GFF6899	0.48	+0.5
34,079	+		GFF6899	0.48	-0.2
34,079	+		GFF6899	0.48	-1.0
34,079	+		GFF6899	0.48	-0.3
34,079	+		GFF6899	0.48	-0.9
34,079	+		GFF6899	0.48	-1.2
34,079	+		GFF6899	0.48	-0.1
34,079	+		GFF6899	0.48	+0.1
34,080	-		GFF6899	0.48	-0.6
34,080	-		GFF6899	0.48	-0.2
34,080	-		GFF6899	0.48	+0.7
34,080	-		GFF6899	0.48	-0.2
34,080	-		GFF6899	0.48	-1.4
34,080	-		GFF6899	0.48	-0.4
34,085	+		GFF6899	0.48	+0.8
34,085	+		GFF6899	0.48	-0.1
34,085	+		GFF6899	0.48	-0.6
34,085	+		GFF6899	0.48	-2.0
34,085	+		GFF6899	0.48	+0.4
34,086	-		GFF6899	0.48	-0.2
34,086	-		GFF6899	0.48	+1.6
34,086	-		GFF6899	0.48	-0.8
34,086	-		GFF6899	0.48	-0.3
34,086	-		GFF6899	0.48	-0.8