Strain Fitness in Variovorax sp. SCN45 around GFF6557

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6555 and GFF6556 are separated by 100 nucleotidesGFF6556 and GFF6557 are separated by 129 nucleotidesGFF6557 and GFF6558 are separated by 84 nucleotides GFF6555 - no description, at 51,524 to 51,907 GFF6555 GFF6556 - hypothetical protein, at 52,008 to 52,367 GFF6556 GFF6557 - hypothetical protein, at 52,497 to 53,798 GFF6557 GFF6558 - 5'-nucleotidase (EC 3.1.3.5), at 53,883 to 55,712 GFF6558 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.531 kb on + strandat 51.866 kb on + strand, within GFF6555at 51.992 kb on - strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.994 kb on + strandat 51.995 kb on - strandat 51.995 kb on - strandat 51.995 kb on - strandat 51.995 kb on - strandat 51.995 kb on - strandat 52.016 kb on + strandat 52.016 kb on + strandat 52.016 kb on + strandat 52.017 kb on - strandat 52.017 kb on - strandat 52.239 kb on + strand, within GFF6556at 52.240 kb on - strand, within GFF6556at 52.240 kb on - strand, within GFF6556at 52.277 kb on - strand, within GFF6556at 52.284 kb on + strand, within GFF6556at 52.285 kb on - strand, within GFF6556at 52.285 kb on - strand, within GFF6556at 52.420 kb on + strandat 52.420 kb on + strandat 52.420 kb on + strandat 52.527 kb on + strandat 52.527 kb on + strandat 52.590 kb on + strandat 52.590 kb on + strandat 52.591 kb on - strandat 52.591 kb on - strandat 52.591 kb on - strandat 52.591 kb on - strandat 52.698 kb on + strand, within GFF6557at 52.882 kb on - strand, within GFF6557at 52.929 kb on + strand, within GFF6557at 52.929 kb on + strand, within GFF6557at 52.930 kb on - strand, within GFF6557at 52.930 kb on - strand, within GFF6557at 52.962 kb on + strand, within GFF6557at 52.962 kb on + strand, within GFF6557at 52.962 kb on + strand, within GFF6557at 52.962 kb on + strand, within GFF6557at 52.963 kb on - strand, within GFF6557at 53.272 kb on + strand, within GFF6557at 53.272 kb on + strand, within GFF6557at 53.373 kb on + strand, within GFF6557at 53.373 kb on + strand, within GFF6557at 53.373 kb on + strand, within GFF6557at 53.373 kb on + strand, within GFF6557at 53.374 kb on - strand, within GFF6557at 53.374 kb on - strand, within GFF6557at 53.399 kb on - strand, within GFF6557at 53.475 kb on + strand, within GFF6557at 53.475 kb on + strand, within GFF6557at 53.475 kb on + strand, within GFF6557at 53.475 kb on + strand, within GFF6557at 53.476 kb on - strand, within GFF6557at 53.568 kb on + strand, within GFF6557at 53.568 kb on + strand, within GFF6557at 53.568 kb on + strand, within GFF6557at 53.568 kb on + strand, within GFF6557at 53.569 kb on - strand, within GFF6557at 53.757 kb on + strandat 53.758 kb on - strandat 53.859 kb on + strandat 53.860 kb on - strandat 53.860 kb on - strandat 53.863 kb on + strandat 53.863 kb on + strandat 53.904 kb on - strandat 53.950 kb on + strandat 53.950 kb on + strandat 53.950 kb on + strandat 53.951 kb on - strandat 53.951 kb on - strandat 53.951 kb on - strandat 53.951 kb on - strandat 54.061 kb on + strandat 54.061 kb on + strandat 54.061 kb on + strandat 54.061 kb on + strandat 54.062 kb on - strandat 54.062 kb on - strandat 54.139 kb on + strand, within GFF6558at 54.139 kb on + strand, within GFF6558at 54.139 kb on + strand, within GFF6558at 54.139 kb on + strand, within GFF6558at 54.139 kb on + strand, within GFF6558at 54.139 kb on + strand, within GFF6558at 54.139 kb on + strand, within GFF6558at 54.140 kb on - strand, within GFF6558at 54.140 kb on - strand, within GFF6558at 54.140 kb on - strand, within GFF6558at 54.140 kb on - strand, within GFF6558at 54.145 kb on + strand, within GFF6558at 54.145 kb on + strand, within GFF6558at 54.230 kb on + strand, within GFF6558at 54.230 kb on + strand, within GFF6558at 54.258 kb on + strand, within GFF6558at 54.301 kb on + strand, within GFF6558at 54.302 kb on - strand, within GFF6558at 54.526 kb on + strand, within GFF6558at 54.526 kb on + strand, within GFF6558at 54.526 kb on + strand, within GFF6558at 54.526 kb on + strand, within GFF6558at 54.527 kb on - strand, within GFF6558at 54.592 kb on + strand, within GFF6558at 54.592 kb on + strand, within GFF6558at 54.592 kb on + strand, within GFF6558at 54.592 kb on + strand, within GFF6558at 54.592 kb on + strand, within GFF6558at 54.592 kb on + strand, within GFF6558at 54.593 kb on - strand, within GFF6558at 54.593 kb on - strand, within GFF6558at 54.593 kb on - strand, within GFF6558at 54.613 kb on + strand, within GFF6558at 54.613 kb on + strand, within GFF6558at 54.613 kb on + strand, within GFF6558at 54.614 kb on - strand, within GFF6558at 54.614 kb on - strand, within GFF6558at 54.614 kb on - strand, within GFF6558at 54.712 kb on + strand, within GFF6558at 54.764 kb on - strand, within GFF6558at 54.775 kb on + strand, within GFF6558at 54.775 kb on + strand, within GFF6558at 54.775 kb on + strand, within GFF6558at 54.775 kb on + strand, within GFF6558at 54.775 kb on + strand, within GFF6558at 54.776 kb on - strand, within GFF6558at 54.776 kb on - strand, within GFF6558at 54.776 kb on - strand, within GFF6558at 54.776 kb on - strand, within GFF6558

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
51,531 + -0.3
51,866 + GFF6555 0.89 +0.1
51,992 - -0.2
51,994 + -1.6
51,994 + +0.9
51,994 + -0.7
51,994 + -2.0
51,994 + +0.5
51,994 + -0.6
51,994 + +1.2
51,994 + -0.6
51,994 + +0.8
51,994 + -0.2
51,995 - +0.1
51,995 - -0.5
51,995 - +0.4
51,995 - -0.7
51,995 - -0.0
52,016 + -0.2
52,016 + -0.2
52,016 + +0.9
52,017 - -1.3
52,017 - +0.1
52,239 + GFF6556 0.64 +0.5
52,240 - GFF6556 0.64 -1.0
52,240 - GFF6556 0.64 +0.3
52,277 - GFF6556 0.75 -0.6
52,284 + GFF6556 0.77 -0.5
52,285 - GFF6556 0.77 -0.6
52,285 - GFF6556 0.77 -0.1
52,420 + -0.5
52,420 + +0.2
52,420 + -1.0
52,527 + +0.4
52,527 + +0.2
52,590 + +0.3
52,590 + +0.6
52,591 - -0.3
52,591 - -2.5
52,591 - -0.1
52,591 - -0.3
52,698 + GFF6557 0.15 -1.1
52,882 - GFF6557 0.30 -0.3
52,929 + GFF6557 0.33 -1.1
52,929 + GFF6557 0.33 +0.2
52,930 - GFF6557 0.33 +0.4
52,930 - GFF6557 0.33 -0.2
52,962 + GFF6557 0.36 +0.3
52,962 + GFF6557 0.36 +1.1
52,962 + GFF6557 0.36 +0.6
52,962 + GFF6557 0.36 +0.3
52,963 - GFF6557 0.36 -0.4
53,272 + GFF6557 0.60 +0.1
53,272 + GFF6557 0.60 +0.6
53,373 + GFF6557 0.67 -0.1
53,373 + GFF6557 0.67 -0.8
53,373 + GFF6557 0.67 +0.5
53,373 + GFF6557 0.67 -1.4
53,374 - GFF6557 0.67 -0.1
53,374 - GFF6557 0.67 +0.8
53,399 - GFF6557 0.69 +0.2
53,475 + GFF6557 0.75 +1.1
53,475 + GFF6557 0.75 -0.8
53,475 + GFF6557 0.75 +1.3
53,475 + GFF6557 0.75 +0.4
53,476 - GFF6557 0.75 -0.4
53,568 + GFF6557 0.82 -0.0
53,568 + GFF6557 0.82 -0.5
53,568 + GFF6557 0.82 -0.8
53,568 + GFF6557 0.82 +0.6
53,569 - GFF6557 0.82 +0.0
53,757 + -0.0
53,758 - -0.9
53,859 + +1.0
53,860 - +0.5
53,860 - +0.9
53,863 + +0.4
53,863 + -0.6
53,904 - +0.3
53,950 + -1.9
53,950 + -1.8
53,950 + -0.2
53,951 - -1.5
53,951 - -1.4
53,951 - +0.7
53,951 - +0.6
54,061 + -0.8
54,061 + +0.3
54,061 + -0.0
54,061 + -0.1
54,062 - -0.3
54,062 - -1.4
54,139 + GFF6558 0.14 -0.2
54,139 + GFF6558 0.14 -0.1
54,139 + GFF6558 0.14 +0.4
54,139 + GFF6558 0.14 -2.0
54,139 + GFF6558 0.14 +0.2
54,139 + GFF6558 0.14 +1.2
54,139 + GFF6558 0.14 -1.2
54,140 - GFF6558 0.14 -0.0
54,140 - GFF6558 0.14 -1.9
54,140 - GFF6558 0.14 -1.3
54,140 - GFF6558 0.14 +0.9
54,145 + GFF6558 0.14 +1.6
54,145 + GFF6558 0.14 +0.0
54,230 + GFF6558 0.19 -0.0
54,230 + GFF6558 0.19 -0.2
54,258 + GFF6558 0.20 +1.0
54,301 + GFF6558 0.23 -0.0
54,302 - GFF6558 0.23 +0.1
54,526 + GFF6558 0.35 -1.0
54,526 + GFF6558 0.35 +0.2
54,526 + GFF6558 0.35 +1.0
54,526 + GFF6558 0.35 -0.4
54,527 - GFF6558 0.35 -0.8
54,592 + GFF6558 0.39 -1.0
54,592 + GFF6558 0.39 +2.2
54,592 + GFF6558 0.39 -1.2
54,592 + GFF6558 0.39 -0.1
54,592 + GFF6558 0.39 +1.2
54,592 + GFF6558 0.39 +0.5
54,593 - GFF6558 0.39 -0.1
54,593 - GFF6558 0.39 -1.0
54,593 - GFF6558 0.39 -0.3
54,613 + GFF6558 0.40 +0.6
54,613 + GFF6558 0.40 +0.4
54,613 + GFF6558 0.40 +0.5
54,614 - GFF6558 0.40 -0.1
54,614 - GFF6558 0.40 -0.4
54,614 - GFF6558 0.40 -1.4
54,712 + GFF6558 0.45 -0.8
54,764 - GFF6558 0.48 -1.4
54,775 + GFF6558 0.49 +0.3
54,775 + GFF6558 0.49 -0.0
54,775 + GFF6558 0.49 -0.9
54,775 + GFF6558 0.49 -1.2
54,775 + GFF6558 0.49 -0.6
54,776 - GFF6558 0.49 -0.8
54,776 - GFF6558 0.49 -0.6
54,776 - GFF6558 0.49 -0.8
54,776 - GFF6558 0.49 +0.5

Or see this region's nucleotide sequence