Strain Fitness in Variovorax sp. SCN45 around GFF6447

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6446 and GFF6447 are separated by 67 nucleotidesGFF6447 and GFF6448 are separated by 195 nucleotides GFF6446 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 22,295 to 23,368 GFF6446 GFF6447 - no description, at 23,436 to 24,272 GFF6447 GFF6448 - Glucans biosynthesis protein D precursor, at 24,468 to 26,066 GFF6448 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 22.748 kb on + strand, within GFF6446at 22.748 kb on + strand, within GFF6446at 22.748 kb on + strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.842 kb on - strand, within GFF6446at 22.943 kb on + strand, within GFF6446at 22.944 kb on - strand, within GFF6446at 23.036 kb on + strand, within GFF6446at 23.036 kb on + strand, within GFF6446at 23.037 kb on - strand, within GFF6446at 23.273 kb on + strandat 23.273 kb on + strandat 23.274 kb on - strandat 23.274 kb on - strandat 23.274 kb on - strandat 23.288 kb on + strandat 23.336 kb on + strandat 23.336 kb on + strandat 23.336 kb on + strandat 23.337 kb on - strandat 23.337 kb on - strandat 23.553 kb on + strand, within GFF6447at 23.553 kb on + strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 24.156 kb on + strand, within GFF6447at 24.157 kb on - strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.234 kb on + strandat 24.234 kb on + strandat 24.234 kb on + strandat 24.235 kb on - strandat 24.235 kb on - strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.270 kb on + strandat 24.271 kb on - strandat 24.286 kb on + strandat 24.290 kb on + strandat 24.290 kb on + strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.636 kb on + strand, within GFF6448at 24.636 kb on + strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.865 kb on - strand, within GFF6448at 24.865 kb on - strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.035 kb on + strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.041 kb on + strand, within GFF6448at 25.041 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.123 kb on - strand, within GFF6448at 25.123 kb on - strand, within GFF6448

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
22,748 + GFF6446 0.42 -0.6
22,748 + GFF6446 0.42 -0.5
22,748 + GFF6446 0.42 -0.8
22,749 - GFF6446 0.42 +1.2
22,749 - GFF6446 0.42 -0.3
22,749 - GFF6446 0.42 -2.2
22,749 - GFF6446 0.42 +0.7
22,841 + GFF6446 0.51 -0.0
22,841 + GFF6446 0.51 +0.1
22,841 + GFF6446 0.51 +0.8
22,841 + GFF6446 0.51 -0.4
22,841 + GFF6446 0.51 -1.0
22,842 - GFF6446 0.51 -0.4
22,943 + GFF6446 0.60 -1.3
22,944 - GFF6446 0.60 -0.5
23,036 + GFF6446 0.69 -0.0
23,036 + GFF6446 0.69 -0.3
23,037 - GFF6446 0.69 -0.5
23,273 + -0.4
23,273 + +0.1
23,274 - -1.0
23,274 - +0.5
23,274 - +0.5
23,288 + -0.9
23,336 + +0.2
23,336 + -0.4
23,336 + +0.1
23,337 - +0.5
23,337 - -1.8
23,553 + GFF6447 0.14 -1.2
23,553 + GFF6447 0.14 -0.1
23,554 - GFF6447 0.14 +0.3
23,554 - GFF6447 0.14 -0.1
23,554 - GFF6447 0.14 +0.3
23,554 - GFF6447 0.14 +0.9
23,622 + GFF6447 0.22 -0.4
23,622 + GFF6447 0.22 +0.5
23,622 + GFF6447 0.22 +0.3
23,623 - GFF6447 0.22 +0.2
23,623 - GFF6447 0.22 +1.1
23,727 + GFF6447 0.35 +0.4
23,727 + GFF6447 0.35 -0.2
23,728 - GFF6447 0.35 -1.5
23,728 - GFF6447 0.35 +0.2
23,940 + GFF6447 0.60 +1.5
23,940 + GFF6447 0.60 +0.5
23,940 + GFF6447 0.60 -0.5
23,941 - GFF6447 0.60 +0.7
23,941 - GFF6447 0.60 +1.7
23,941 - GFF6447 0.60 +0.7
23,941 - GFF6447 0.60 +0.2
23,941 - GFF6447 0.60 +0.3
23,941 - GFF6447 0.60 -0.0
23,941 - GFF6447 0.60 -1.8
24,156 + GFF6447 0.86 +0.1
24,157 - GFF6447 0.86 -0.5
24,186 + GFF6447 0.90 +1.1
24,186 + GFF6447 0.90 -0.4
24,186 + GFF6447 0.90 +1.8
24,186 + GFF6447 0.90 +0.1
24,186 + GFF6447 0.90 +0.2
24,186 + GFF6447 0.90 -0.2
24,186 + GFF6447 0.90 -0.6
24,186 + GFF6447 0.90 +0.2
24,186 + GFF6447 0.90 +1.4
24,187 - GFF6447 0.90 +0.2
24,187 - GFF6447 0.90 -1.8
24,187 - GFF6447 0.90 +1.1
24,187 - GFF6447 0.90 -0.6
24,187 - GFF6447 0.90 -0.4
24,187 - GFF6447 0.90 -0.8
24,234 + -0.8
24,234 + +0.1
24,234 + -0.2
24,235 - +0.5
24,235 - +1.5
24,243 + -1.9
24,243 + -0.8
24,243 + -0.4
24,243 + -0.6
24,243 + +2.2
24,243 + +0.0
24,243 + -0.0
24,243 + -0.2
24,243 + +0.5
24,243 + -0.1
24,243 + -0.6
24,243 + -0.2
24,244 - -1.2
24,244 - -1.6
24,244 - -0.6
24,244 - -0.2
24,244 - -0.8
24,244 - +1.5
24,244 - -0.6
24,270 + -0.8
24,271 - -0.5
24,286 + +1.0
24,290 + -1.5
24,290 + +1.5
24,291 - -1.6
24,291 - -2.2
24,291 - +0.7
24,291 - +1.2
24,636 + GFF6448 0.11 +0.6
24,636 + GFF6448 0.11 -1.1
24,637 - GFF6448 0.11 +0.0
24,637 - GFF6448 0.11 -0.0
24,637 - GFF6448 0.11 -0.6
24,637 - GFF6448 0.11 -0.6
24,852 + GFF6448 0.24 +0.9
24,852 + GFF6448 0.24 -0.5
24,852 + GFF6448 0.24 +0.2
24,852 + GFF6448 0.24 -0.2
24,852 + GFF6448 0.24 -0.5
24,853 - GFF6448 0.24 -0.7
24,853 - GFF6448 0.24 +1.8
24,853 - GFF6448 0.24 -0.3
24,864 + GFF6448 0.25 -0.6
24,864 + GFF6448 0.25 +0.1
24,864 + GFF6448 0.25 -0.5
24,865 - GFF6448 0.25 +1.3
24,865 - GFF6448 0.25 +0.2
25,011 + GFF6448 0.34 +0.0
25,011 + GFF6448 0.34 -0.3
25,011 + GFF6448 0.34 -0.2
25,011 + GFF6448 0.34 +0.2
25,012 - GFF6448 0.34 -0.7
25,012 - GFF6448 0.34 -1.5
25,012 - GFF6448 0.34 +0.0
25,012 - GFF6448 0.34 +0.1
25,035 + GFF6448 0.35 +2.1
25,036 - GFF6448 0.36 -0.5
25,036 - GFF6448 0.36 +0.4
25,036 - GFF6448 0.36 +0.7
25,036 - GFF6448 0.36 -0.1
25,041 + GFF6448 0.36 -0.6
25,041 + GFF6448 0.36 -1.0
25,122 + GFF6448 0.41 -0.6
25,122 + GFF6448 0.41 -0.8
25,122 + GFF6448 0.41 -2.4
25,123 - GFF6448 0.41 -0.2
25,123 - GFF6448 0.41 +0.5

Or see this region's nucleotide sequence