Strain Fitness in Variovorax sp. SCN45 around GFF6446

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6444 and GFF6445 are separated by 83 nucleotidesGFF6445 and GFF6446 overlap by 14 nucleotidesGFF6446 and GFF6447 are separated by 67 nucleotides GFF6444 - no description, at 19,421 to 21,316 GFF6444 GFF6445 - Nitroreductase, at 21,400 to 22,308 GFF6445 GFF6446 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 22,295 to 23,368 GFF6446 GFF6447 - no description, at 23,436 to 24,272 GFF6447 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.344 kb on - strandat 21.357 kb on + strandat 21.357 kb on + strandat 22.748 kb on + strand, within GFF6446at 22.748 kb on + strand, within GFF6446at 22.748 kb on + strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.842 kb on - strand, within GFF6446at 22.943 kb on + strand, within GFF6446at 22.944 kb on - strand, within GFF6446at 23.036 kb on + strand, within GFF6446at 23.036 kb on + strand, within GFF6446at 23.037 kb on - strand, within GFF6446at 23.273 kb on + strandat 23.273 kb on + strandat 23.274 kb on - strandat 23.274 kb on - strandat 23.274 kb on - strandat 23.288 kb on + strandat 23.336 kb on + strandat 23.336 kb on + strandat 23.336 kb on + strandat 23.337 kb on - strandat 23.337 kb on - strandat 23.553 kb on + strand, within GFF6447at 23.553 kb on + strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 24.156 kb on + strand, within GFF6447at 24.157 kb on - strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.234 kb on + strandat 24.234 kb on + strandat 24.234 kb on + strandat 24.235 kb on - strandat 24.235 kb on - strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.270 kb on + strandat 24.271 kb on - strandat 24.286 kb on + strandat 24.290 kb on + strandat 24.290 kb on + strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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21,344 - -0.2
21,357 + -0.8
21,357 + +0.2
22,748 + GFF6446 0.42 -0.6
22,748 + GFF6446 0.42 -0.5
22,748 + GFF6446 0.42 -0.8
22,749 - GFF6446 0.42 +1.2
22,749 - GFF6446 0.42 -0.3
22,749 - GFF6446 0.42 -2.2
22,749 - GFF6446 0.42 +0.7
22,841 + GFF6446 0.51 -0.0
22,841 + GFF6446 0.51 +0.1
22,841 + GFF6446 0.51 +0.8
22,841 + GFF6446 0.51 -0.4
22,841 + GFF6446 0.51 -1.0
22,842 - GFF6446 0.51 -0.4
22,943 + GFF6446 0.60 -1.3
22,944 - GFF6446 0.60 -0.5
23,036 + GFF6446 0.69 -0.0
23,036 + GFF6446 0.69 -0.3
23,037 - GFF6446 0.69 -0.5
23,273 + -0.4
23,273 + +0.1
23,274 - -1.0
23,274 - +0.5
23,274 - +0.5
23,288 + -0.9
23,336 + +0.2
23,336 + -0.4
23,336 + +0.1
23,337 - +0.5
23,337 - -1.8
23,553 + GFF6447 0.14 -1.2
23,553 + GFF6447 0.14 -0.1
23,554 - GFF6447 0.14 +0.3
23,554 - GFF6447 0.14 -0.1
23,554 - GFF6447 0.14 +0.3
23,554 - GFF6447 0.14 +0.9
23,622 + GFF6447 0.22 -0.4
23,622 + GFF6447 0.22 +0.5
23,622 + GFF6447 0.22 +0.3
23,623 - GFF6447 0.22 +0.2
23,623 - GFF6447 0.22 +1.1
23,727 + GFF6447 0.35 +0.4
23,727 + GFF6447 0.35 -0.2
23,728 - GFF6447 0.35 -1.5
23,728 - GFF6447 0.35 +0.2
23,940 + GFF6447 0.60 +1.5
23,940 + GFF6447 0.60 +0.5
23,940 + GFF6447 0.60 -0.5
23,941 - GFF6447 0.60 +0.7
23,941 - GFF6447 0.60 +1.7
23,941 - GFF6447 0.60 +0.7
23,941 - GFF6447 0.60 +0.2
23,941 - GFF6447 0.60 +0.3
23,941 - GFF6447 0.60 -0.0
23,941 - GFF6447 0.60 -1.8
24,156 + GFF6447 0.86 +0.1
24,157 - GFF6447 0.86 -0.5
24,186 + GFF6447 0.90 +1.1
24,186 + GFF6447 0.90 -0.4
24,186 + GFF6447 0.90 +1.8
24,186 + GFF6447 0.90 +0.1
24,186 + GFF6447 0.90 +0.2
24,186 + GFF6447 0.90 -0.2
24,186 + GFF6447 0.90 -0.6
24,186 + GFF6447 0.90 +0.2
24,186 + GFF6447 0.90 +1.4
24,187 - GFF6447 0.90 +0.2
24,187 - GFF6447 0.90 -1.8
24,187 - GFF6447 0.90 +1.1
24,187 - GFF6447 0.90 -0.6
24,187 - GFF6447 0.90 -0.4
24,187 - GFF6447 0.90 -0.8
24,234 + -0.8
24,234 + +0.1
24,234 + -0.2
24,235 - +0.5
24,235 - +1.5
24,243 + -1.9
24,243 + -0.8
24,243 + -0.4
24,243 + -0.6
24,243 + +2.2
24,243 + +0.0
24,243 + -0.0
24,243 + -0.2
24,243 + +0.5
24,243 + -0.1
24,243 + -0.6
24,243 + -0.2
24,244 - -1.2
24,244 - -1.6
24,244 - -0.6
24,244 - -0.2
24,244 - -0.8
24,244 - +1.5
24,244 - -0.6
24,270 + -0.8
24,271 - -0.5
24,286 + +1.0
24,290 + -1.5
24,290 + +1.5
24,291 - -1.6
24,291 - -2.2
24,291 - +0.7
24,291 - +1.2

Or see this region's nucleotide sequence