Strain Fitness in Variovorax sp. SCN45 around GFF6404

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
77,736	+		GFF6402	0.82	+0.1
77,737	-		GFF6402	0.82	+0.5
77,737	-		GFF6402	0.82	+1.0
78,299	+		GFF6403	0.54	-0.9
78,299	+		GFF6403	0.54	-0.0
78,694	+				-0.7
78,694	+				+0.5
78,694	+				+0.6
78,694	+				-0.5
78,694	+				-0.3
78,694	+				+0.6
78,694	+				-1.2
78,695	-				+0.3
78,695	-				-0.1
78,695	-				-0.3
78,787	+		GFF6404	0.12	+0.1
78,787	+		GFF6404	0.12	+1.0
78,787	+		GFF6404	0.12	-0.3
78,787	+		GFF6404	0.12	-1.4
78,787	+		GFF6404	0.12	+0.4
78,788	-		GFF6404	0.12	+0.1
78,788	-		GFF6404	0.12	-0.4
78,788	-		GFF6404	0.12	-1.5
78,788	-		GFF6404	0.12	-0.0
78,808	+		GFF6404	0.15	-0.3
78,808	+		GFF6404	0.15	-0.1
78,808	+		GFF6404	0.15	+1.4
78,809	-		GFF6404	0.15	+0.3
78,809	-		GFF6404	0.15	+2.0
78,809	-		GFF6404	0.15	-0.0
78,809	-		GFF6404	0.15	-0.5
78,809	-		GFF6404	0.15	+0.4
78,927	+		GFF6404	0.33	-0.0
79,069	+		GFF6404	0.54	-1.0
79,069	+		GFF6404	0.54	-0.6
79,069	+		GFF6404	0.54	+0.5
79,069	+		GFF6404	0.54	-0.4
79,070	-		GFF6404	0.54	+0.3
79,070	-		GFF6404	0.54	+0.4
79,070	-		GFF6404	0.54	-0.5
79,070	-		GFF6404	0.54	+1.0
79,070	-		GFF6404	0.54	-0.3
79,081	+		GFF6404	0.56	-0.0
79,201	+		GFF6404	0.74	-1.3
79,201	+		GFF6404	0.74	-0.0
79,201	+		GFF6404	0.74	+0.0
79,202	-		GFF6404	0.74	-1.2
79,219	+		GFF6404	0.76	+0.9
79,219	+		GFF6404	0.76	-0.8
79,219	+		GFF6404	0.76	+0.4
79,220	-		GFF6404	0.77	-0.2
79,385	+				-1.3
79,385	+				+0.3
79,385	+				+0.7
79,385	+				+0.5
79,385	+				+0.9
79,385	+				+0.1
79,385	+				-0.1
79,386	-				-2.0
79,386	-				-0.0
79,386	-				-0.2
79,386	-				-0.3
79,386	-				+0.2
79,386	-				+2.4
79,386	-				-0.9
79,386	-				-0.7
79,386	-				-1.0
79,386	-				-0.0
79,386	-				-0.9
79,386	-				+0.7
79,427	+				+0.0
79,427	+				-0.6
79,427	+				-0.7
79,427	+				+0.3
79,427	+				-0.8
79,428	-				-0.2
79,428	-				-1.0
79,428	-				-0.6
79,428	-				+1.0
79,428	-				-1.5
79,428	-				-0.9
79,511	+		GFF6405	0.17	+0.6
79,511	+		GFF6405	0.17	+0.5
79,511	+		GFF6405	0.17	-0.3
79,512	-		GFF6405	0.17	+0.4
79,568	+		GFF6405	0.24	-0.0
79,568	+		GFF6405	0.24	+1.6
79,569	-		GFF6405	0.25	+0.4
79,569	-		GFF6405	0.25	+0.6
79,569	-		GFF6405	0.25	+0.7
79,569	-		GFF6405	0.25	-0.2
79,569	-		GFF6405	0.25	+0.3
79,569	-		GFF6405	0.25	-0.2
79,574	+		GFF6405	0.25	-0.3
79,574	+		GFF6405	0.25	+1.2
79,575	-		GFF6405	0.25	-0.0
79,575	-		GFF6405	0.25	-0.9
79,575	-		GFF6405	0.25	+0.5
79,691	+		GFF6405	0.41	-0.0
79,691	+		GFF6405	0.41	-0.8
79,691	+		GFF6405	0.41	-1.2
79,691	+		GFF6405	0.41	-0.0
79,691	+		GFF6405	0.41	+0.7
79,691	+		GFF6405	0.41	-1.0
79,691	+		GFF6405	0.41	+0.5
79,692	-		GFF6405	0.41	-0.1
79,692	-		GFF6405	0.41	+0.5
79,802	+		GFF6405	0.56	+0.2
79,802	+		GFF6405	0.56	-0.4
79,803	-		GFF6405	0.56	-0.2
79,803	-		GFF6405	0.56	-0.9
79,805	+		GFF6405	0.56	-0.5
79,805	+		GFF6405	0.56	-0.2
79,806	-		GFF6405	0.56	+0.2
79,850	+		GFF6405	0.62	-1.4
79,850	+		GFF6405	0.62	+0.7
79,850	+		GFF6405	0.62	+0.4
79,850	+		GFF6405	0.62	-1.0
79,850	+		GFF6405	0.62	-0.9
79,850	+		GFF6405	0.62	-1.2
79,850	+		GFF6405	0.62	+0.1
79,850	+		GFF6405	0.62	-0.9
79,850	+		GFF6405	0.62	+1.1
79,850	+		GFF6405	0.62	-0.9
79,851	-		GFF6405	0.62	+0.4
79,851	-		GFF6405	0.62	-0.6
80,188	-				-0.1