Strain Fitness in Variovorax sp. SCN45 around GFF6368

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6367 and GFF6368 are separated by 0 nucleotidesGFF6368 and GFF6369 overlap by 4 nucleotidesGFF6369 and GFF6370 are separated by 96 nucleotides GFF6367 - T6SS component TssF (ImpG/VasA), at 36,278 to 38,149 GFF6367 GFF6368 - T6SS lysozyme-like component TssE, at 38,150 to 38,698 GFF6368 GFF6369 - T6SS associated component TagJ (ImpE), at 38,695 to 39,558 GFF6369 GFF6370 - T6SS component Hcp, at 39,655 to 40,119 GFF6370 Position (kb) 38 39Strain fitness (log2 ratio) -1 0 1at 37.363 kb on - strand, within GFF6367at 37.363 kb on - strand, within GFF6367at 38.104 kb on + strandat 38.105 kb on - strandat 38.106 kb on + strandat 38.106 kb on + strandat 38.127 kb on + strandat 38.434 kb on - strand, within GFF6368at 38.795 kb on + strand, within GFF6369at 39.164 kb on - strand, within GFF6369

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
37,363 - GFF6367 0.58 -0.1
37,363 - GFF6367 0.58 +0.4
38,104 + -0.6
38,105 - -0.0
38,106 + -0.9
38,106 + -0.5
38,127 + -0.4
38,434 - GFF6368 0.52 +0.0
38,795 + GFF6369 0.12 -1.6
39,164 - GFF6369 0.54 -0.0

Or see this region's nucleotide sequence