Strain Fitness in Variovorax sp. SCN45 around GFF6302

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6301 and GFF6302 are separated by 126 nucleotidesGFF6302 and GFF6303 are separated by 46 nucleotides GFF6301 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 90,255 to 91,193 GFF6301 GFF6302 - Transcriptional regulator, IclR family, at 91,320 to 92,060 GFF6302 GFF6303 - BUG/TctC family periplasmic protein, at 92,107 to 93,078 GFF6303 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1at 90.322 kb on + strandat 90.322 kb on + strandat 90.323 kb on - strandat 90.323 kb on - strandat 90.323 kb on - strandat 90.466 kb on + strand, within GFF6301at 90.466 kb on + strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.647 kb on - strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.271 kb on - strandat 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.548 kb on + strand, within GFF6302at 91.548 kb on + strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.998 kb on + strandat 91.998 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.173 kb on + strandat 92.173 kb on + strandat 92.173 kb on + strandat 92.174 kb on - strandat 92.174 kb on - strandat 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.318 kb on + strand, within GFF6303at 92.318 kb on + strand, within GFF6303at 92.318 kb on + strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.349 kb on - strand, within GFF6303at 92.528 kb on + strand, within GFF6303at 92.529 kb on - strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.754 kb on - strand, within GFF6303at 92.769 kb on - strand, within GFF6303

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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90,322 + +0.9
90,322 + -1.5
90,323 - -1.0
90,323 - -1.2
90,323 - -0.0
90,466 + GFF6301 0.22 -0.8
90,466 + GFF6301 0.22 +0.1
90,467 - GFF6301 0.23 -0.2
90,467 - GFF6301 0.23 -0.8
90,467 - GFF6301 0.23 +0.2
90,646 + GFF6301 0.42 +0.3
90,646 + GFF6301 0.42 -0.3
90,646 + GFF6301 0.42 -0.8
90,646 + GFF6301 0.42 +0.5
90,646 + GFF6301 0.42 -0.7
90,646 + GFF6301 0.42 -0.2
90,646 + GFF6301 0.42 +0.4
90,647 - GFF6301 0.42 -0.6
91,084 + GFF6301 0.88 -0.2
91,084 + GFF6301 0.88 -0.6
91,084 + GFF6301 0.88 -0.3
91,085 - GFF6301 0.88 +0.1
91,085 - GFF6301 0.88 -0.3
91,085 - GFF6301 0.88 -0.3
91,271 - -0.5
91,473 + GFF6302 0.21 +0.6
91,473 + GFF6302 0.21 -1.5
91,473 + GFF6302 0.21 +0.0
91,473 + GFF6302 0.21 -0.7
91,473 + GFF6302 0.21 -1.9
91,473 + GFF6302 0.21 -0.6
91,473 + GFF6302 0.21 -0.3
91,473 + GFF6302 0.21 -0.7
91,473 + GFF6302 0.21 -0.2
91,474 - GFF6302 0.21 -0.9
91,474 - GFF6302 0.21 -0.8
91,474 - GFF6302 0.21 -1.1
91,474 - GFF6302 0.21 +0.1
91,474 - GFF6302 0.21 +0.2
91,474 - GFF6302 0.21 -0.9
91,474 - GFF6302 0.21 -0.2
91,474 - GFF6302 0.21 -1.1
91,474 - GFF6302 0.21 +0.8
91,474 - GFF6302 0.21 -0.8
91,474 - GFF6302 0.21 +1.1
91,474 - GFF6302 0.21 -0.2
91,548 + GFF6302 0.31 -0.5
91,548 + GFF6302 0.31 -0.1
91,549 - GFF6302 0.31 -0.7
91,549 - GFF6302 0.31 +0.3
91,549 - GFF6302 0.31 -0.2
91,587 + GFF6302 0.36 +0.4
91,587 + GFF6302 0.36 -0.3
91,587 + GFF6302 0.36 -0.0
91,587 + GFF6302 0.36 -1.0
91,587 + GFF6302 0.36 -0.8
91,588 - GFF6302 0.36 +1.5
91,588 - GFF6302 0.36 -0.9
91,588 - GFF6302 0.36 +0.2
91,588 - GFF6302 0.36 -0.2
91,668 + GFF6302 0.47 -0.9
91,668 + GFF6302 0.47 -0.2
91,668 + GFF6302 0.47 -0.8
91,668 + GFF6302 0.47 -0.3
91,668 + GFF6302 0.47 -0.5
91,668 + GFF6302 0.47 +0.5
91,669 - GFF6302 0.47 -2.0
91,669 - GFF6302 0.47 +1.2
91,669 - GFF6302 0.47 -1.3
91,669 - GFF6302 0.47 -1.2
91,669 - GFF6302 0.47 -0.2
91,669 - GFF6302 0.47 +0.3
91,669 - GFF6302 0.47 -0.3
91,669 - GFF6302 0.47 -0.8
91,860 + GFF6302 0.73 -0.3
91,860 + GFF6302 0.73 +0.3
91,860 + GFF6302 0.73 +1.3
91,860 + GFF6302 0.73 -0.5
91,860 + GFF6302 0.73 +0.3
91,860 + GFF6302 0.73 -0.9
91,860 + GFF6302 0.73 -2.3
91,861 - GFF6302 0.73 -0.4
91,861 - GFF6302 0.73 +0.3
91,861 - GFF6302 0.73 -1.7
91,861 - GFF6302 0.73 -0.9
91,861 - GFF6302 0.73 -1.2
91,998 + -0.6
91,998 + -1.1
92,010 + -2.5
92,010 + -0.6
92,010 + -0.6
92,010 + -0.2
92,010 + -1.0
92,010 + +0.6
92,010 + +0.8
92,010 + -0.9
92,010 + -0.0
92,011 - +1.4
92,011 - -0.0
92,011 - +0.0
92,011 - -0.4
92,011 - -0.0
92,011 - -0.2
92,173 + -0.4
92,173 + +0.1
92,173 + -2.8
92,174 - +0.4
92,174 - +0.6
92,225 + GFF6303 0.12 -0.4
92,225 + GFF6303 0.12 -0.1
92,225 + GFF6303 0.12 +0.7
92,225 + GFF6303 0.12 +0.6
92,225 + GFF6303 0.12 -0.6
92,226 - GFF6303 0.12 -0.2
92,226 - GFF6303 0.12 -0.7
92,226 - GFF6303 0.12 -1.8
92,226 - GFF6303 0.12 -0.3
92,226 - GFF6303 0.12 +0.5
92,226 - GFF6303 0.12 -0.1
92,226 - GFF6303 0.12 -0.9
92,318 + GFF6303 0.22 +1.1
92,318 + GFF6303 0.22 -0.1
92,318 + GFF6303 0.22 +0.5
92,319 - GFF6303 0.22 -0.8
92,319 - GFF6303 0.22 -0.8
92,319 - GFF6303 0.22 +0.1
92,319 - GFF6303 0.22 -0.8
92,319 - GFF6303 0.22 +0.3
92,319 - GFF6303 0.22 -0.7
92,319 - GFF6303 0.22 +0.9
92,349 - GFF6303 0.25 +0.1
92,528 + GFF6303 0.43 -1.1
92,529 - GFF6303 0.43 -0.9
92,615 + GFF6303 0.52 -0.6
92,615 + GFF6303 0.52 -0.2
92,615 + GFF6303 0.52 -0.4
92,615 + GFF6303 0.52 -0.4
92,615 + GFF6303 0.52 +0.8
92,615 + GFF6303 0.52 +0.9
92,615 + GFF6303 0.52 -0.3
92,615 + GFF6303 0.52 +0.9
92,615 + GFF6303 0.52 -0.5
92,615 + GFF6303 0.52 -0.5
92,615 + GFF6303 0.52 -1.6
92,615 + GFF6303 0.52 -0.5
92,615 + GFF6303 0.52 -0.7
92,616 - GFF6303 0.52 -0.3
92,616 - GFF6303 0.52 +1.1
92,616 - GFF6303 0.52 -0.1
92,616 - GFF6303 0.52 +0.4
92,616 - GFF6303 0.52 +0.2
92,616 - GFF6303 0.52 +0.9
92,616 - GFF6303 0.52 -0.0
92,616 - GFF6303 0.52 -0.4
92,616 - GFF6303 0.52 -0.9
92,754 - GFF6303 0.67 -0.9
92,769 - GFF6303 0.68 -0.7

Or see this region's nucleotide sequence