Strain Fitness in Variovorax sp. SCN45 around GFF6084

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6082 and GFF6083 overlap by 20 nucleotidesGFF6083 and GFF6084 overlap by 4 nucleotidesGFF6084 and GFF6085 overlap by 4 nucleotidesGFF6085 and GFF6086 are separated by 81 nucleotides GFF6082 - MoxR-like ATPase in aerotolerance operon, at 144,126 to 145,139 GFF6082 GFF6083 - hypothetical protein PA3071, at 145,120 to 146,109 GFF6083 GFF6084 - Aerotolerance protein BatA, at 146,106 to 147,143 GFF6084 GFF6085 - Transcriptional regulator, AcrR family, at 147,140 to 147,727 GFF6085 GFF6086 - Putative short-chain dehydrogenase, at 147,809 to 148,660 GFF6086 Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 145.137 kb on + strandat 145.137 kb on + strandat 145.138 kb on - strandat 145.138 kb on - strandat 145.310 kb on - strand, within GFF6083at 145.310 kb on - strand, within GFF6083at 145.310 kb on - strand, within GFF6083at 145.546 kb on + strand, within GFF6083at 146.053 kb on - strandat 146.053 kb on - strandat 146.170 kb on - strandat 146.170 kb on - strandat 146.170 kb on - strandat 146.170 kb on - strandat 146.170 kb on - strandat 146.182 kb on + strandat 146.182 kb on + strandat 146.183 kb on - strandat 146.211 kb on + strand, within GFF6084at 146.211 kb on + strand, within GFF6084at 146.212 kb on - strand, within GFF6084at 146.212 kb on - strand, within GFF6084at 146.853 kb on + strand, within GFF6084at 146.853 kb on + strand, within GFF6084at 146.853 kb on + strand, within GFF6084at 146.854 kb on - strand, within GFF6084at 146.854 kb on - strand, within GFF6084at 146.854 kb on - strand, within GFF6084at 146.970 kb on + strand, within GFF6084at 146.971 kb on - strand, within GFF6084at 146.971 kb on - strand, within GFF6084at 146.971 kb on - strand, within GFF6084at 146.976 kb on + strand, within GFF6084at 146.976 kb on + strand, within GFF6084at 146.976 kb on + strand, within GFF6084at 146.977 kb on - strand, within GFF6084at 146.977 kb on - strand, within GFF6084at 147.009 kb on + strand, within GFF6084at 147.141 kb on + strandat 147.250 kb on - strand, within GFF6085at 147.250 kb on - strand, within GFF6085at 147.269 kb on + strand, within GFF6085at 147.270 kb on - strand, within GFF6085at 147.270 kb on - strand, within GFF6085at 147.357 kb on + strand, within GFF6085at 147.358 kb on - strand, within GFF6085at 147.358 kb on - strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.474 kb on + strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.750 kb on + strandat 147.750 kb on + strandat 147.750 kb on + strandat 147.838 kb on + strandat 147.839 kb on - strandat 147.839 kb on - strandat 147.839 kb on - strandat 147.839 kb on - strandat 147.923 kb on + strand, within GFF6086at 147.923 kb on + strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 148.020 kb on - strand, within GFF6086

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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145,137 + -1.7
145,137 + -0.5
145,138 - -1.1
145,138 - -1.6
145,310 - GFF6083 0.19 +0.5
145,310 - GFF6083 0.19 +1.0
145,310 - GFF6083 0.19 -0.9
145,546 + GFF6083 0.43 +0.3
146,053 - +0.1
146,053 - -2.6
146,170 - +0.4
146,170 - -2.2
146,170 - -0.9
146,170 - +0.2
146,170 - +0.7
146,182 + +0.7
146,182 + +0.7
146,183 - +0.5
146,211 + GFF6084 0.10 +2.1
146,211 + GFF6084 0.10 +0.4
146,212 - GFF6084 0.10 -0.5
146,212 - GFF6084 0.10 +0.9
146,853 + GFF6084 0.72 +1.0
146,853 + GFF6084 0.72 +0.4
146,853 + GFF6084 0.72 +0.5
146,854 - GFF6084 0.72 +0.9
146,854 - GFF6084 0.72 +1.4
146,854 - GFF6084 0.72 -0.8
146,970 + GFF6084 0.83 +0.3
146,971 - GFF6084 0.83 -0.3
146,971 - GFF6084 0.83 -1.2
146,971 - GFF6084 0.83 +0.1
146,976 + GFF6084 0.84 -0.2
146,976 + GFF6084 0.84 -0.1
146,976 + GFF6084 0.84 +2.7
146,977 - GFF6084 0.84 -0.2
146,977 - GFF6084 0.84 -0.4
147,009 + GFF6084 0.87 +0.3
147,141 + +1.3
147,250 - GFF6085 0.19 +0.8
147,250 - GFF6085 0.19 +1.4
147,269 + GFF6085 0.22 +0.3
147,270 - GFF6085 0.22 +2.7
147,270 - GFF6085 0.22 +0.9
147,357 + GFF6085 0.37 -0.3
147,358 - GFF6085 0.37 +1.4
147,358 - GFF6085 0.37 -0.6
147,462 + GFF6085 0.55 -0.7
147,462 + GFF6085 0.55 -1.3
147,462 + GFF6085 0.55 -0.2
147,462 + GFF6085 0.55 -1.3
147,462 + GFF6085 0.55 -1.1
147,462 + GFF6085 0.55 +0.7
147,463 - GFF6085 0.55 +1.4
147,463 - GFF6085 0.55 -0.6
147,463 - GFF6085 0.55 +1.7
147,463 - GFF6085 0.55 -0.6
147,463 - GFF6085 0.55 +0.8
147,463 - GFF6085 0.55 -0.9
147,474 + GFF6085 0.57 +0.7
147,475 - GFF6085 0.57 -0.6
147,475 - GFF6085 0.57 -0.3
147,475 - GFF6085 0.57 +1.1
147,475 - GFF6085 0.57 +0.1
147,475 - GFF6085 0.57 -1.7
147,475 - GFF6085 0.57 -1.1
147,475 - GFF6085 0.57 +0.2
147,588 + GFF6085 0.76 -0.6
147,588 + GFF6085 0.76 -0.9
147,588 + GFF6085 0.76 -0.6
147,588 + GFF6085 0.76 -0.3
147,589 - GFF6085 0.76 +0.8
147,589 - GFF6085 0.76 +0.1
147,589 - GFF6085 0.76 -1.7
147,589 - GFF6085 0.76 -0.3
147,750 + +0.2
147,750 + +0.4
147,750 + +0.4
147,838 + -0.9
147,839 - -0.8
147,839 - +0.1
147,839 - -0.6
147,839 - -0.3
147,923 + GFF6086 0.13 -0.3
147,923 + GFF6086 0.13 -0.0
147,924 - GFF6086 0.13 -1.2
147,924 - GFF6086 0.13 +0.0
147,924 - GFF6086 0.13 +0.4
147,924 - GFF6086 0.13 +0.3
148,020 - GFF6086 0.25 -1.0

Or see this region's nucleotide sequence