Strain Fitness in Variovorax sp. SCN45 around GFF5789

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5787 and GFF5788 are separated by 12 nucleotidesGFF5788 and GFF5789 are separated by 41 nucleotidesGFF5789 and GFF5790 are separated by 16 nucleotidesGFF5790 and GFF5791 overlap by 4 nucleotides GFF5787 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 162,245 to 163,576 GFF5787 GFF5788 - FIG004556: membrane metalloprotease, at 163,589 to 164,260 GFF5788 GFF5789 - YciO protein, TsaC/YrdC paralog, at 164,302 to 164,937 GFF5789 GFF5790 - putative membrane protein, at 164,954 to 165,934 GFF5790 GFF5791 - FIG00031715: Predicted metal-dependent phosphoesterases (PHP family), at 165,931 to 166,788 GFF5791 Position (kb) 164 165Strain fitness (log2 ratio) -2 -1 0 1at 163.591 kb on - strandat 163.635 kb on + strandat 163.635 kb on + strandat 163.635 kb on + strandat 163.636 kb on - strandat 163.636 kb on - strandat 163.636 kb on - strandat 163.636 kb on - strandat 163.668 kb on + strand, within GFF5788at 163.668 kb on + strand, within GFF5788at 163.668 kb on + strand, within GFF5788at 163.668 kb on + strand, within GFF5788at 163.669 kb on - strand, within GFF5788at 163.669 kb on - strand, within GFF5788at 164.061 kb on + strand, within GFF5788at 164.061 kb on + strand, within GFF5788at 164.062 kb on - strand, within GFF5788at 164.135 kb on + strand, within GFF5788at 164.136 kb on - strand, within GFF5788at 164.136 kb on - strand, within GFF5788at 164.136 kb on - strand, within GFF5788at 164.136 kb on - strand, within GFF5788at 164.172 kb on + strand, within GFF5788at 164.173 kb on - strand, within GFF5788at 164.173 kb on - strand, within GFF5788at 164.173 kb on - strand, within GFF5788at 164.173 kb on - strand, within GFF5788at 164.173 kb on - strand, within GFF5788at 164.223 kb on + strandat 164.223 kb on + strandat 164.223 kb on + strandat 164.223 kb on + strandat 164.223 kb on + strandat 164.223 kb on + strandat 164.223 kb on + strandat 164.224 kb on - strandat 164.224 kb on - strandat 164.224 kb on - strandat 164.224 kb on - strandat 164.224 kb on - strandat 164.225 kb on + strandat 164.225 kb on + strandat 164.225 kb on + strandat 164.225 kb on + strandat 164.225 kb on + strandat 164.225 kb on + strandat 164.226 kb on - strandat 164.231 kb on + strandat 164.231 kb on + strandat 164.241 kb on - strandat 164.255 kb on - strandat 164.289 kb on + strandat 164.289 kb on + strandat 164.289 kb on + strandat 164.290 kb on - strandat 164.290 kb on - strandat 164.290 kb on - strandat 164.290 kb on - strandat 164.290 kb on - strandat 164.648 kb on + strand, within GFF5789at 164.648 kb on + strand, within GFF5789at 164.648 kb on + strand, within GFF5789at 164.648 kb on + strand, within GFF5789at 164.648 kb on + strand, within GFF5789at 164.649 kb on - strand, within GFF5789at 164.649 kb on - strand, within GFF5789at 164.681 kb on + strand, within GFF5789at 164.682 kb on - strand, within GFF5789at 164.706 kb on - strand, within GFF5789at 164.706 kb on - strand, within GFF5789at 164.825 kb on + strand, within GFF5789at 164.826 kb on - strand, within GFF5789at 164.927 kb on + strandat 164.928 kb on - strandat 164.944 kb on + strandat 164.944 kb on + strandat 164.945 kb on - strandat 165.080 kb on - strand, within GFF5790at 165.117 kb on + strand, within GFF5790at 165.117 kb on + strand, within GFF5790at 165.123 kb on + strand, within GFF5790at 165.123 kb on + strand, within GFF5790at 165.124 kb on - strand, within GFF5790at 165.156 kb on + strand, within GFF5790at 165.157 kb on - strand, within GFF5790at 165.164 kb on + strand, within GFF5790at 165.165 kb on - strand, within GFF5790at 165.297 kb on + strand, within GFF5790at 165.298 kb on - strand, within GFF5790at 165.298 kb on - strand, within GFF5790at 165.570 kb on + strand, within GFF5790at 165.570 kb on + strand, within GFF5790at 165.570 kb on + strand, within GFF5790at 165.570 kb on + strand, within GFF5790at 165.570 kb on + strand, within GFF5790at 165.571 kb on - strand, within GFF5790at 165.571 kb on - strand, within GFF5790at 165.571 kb on - strand, within GFF5790at 165.571 kb on - strand, within GFF5790at 165.571 kb on - strand, within GFF5790at 165.571 kb on - strand, within GFF5790at 165.714 kb on + strand, within GFF5790at 165.715 kb on - strand, within GFF5790

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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163,591 - -2.3
163,635 + +0.7
163,635 + +1.5
163,635 + -0.4
163,636 - +0.0
163,636 - -0.9
163,636 - -0.5
163,636 - -1.1
163,668 + GFF5788 0.12 +0.3
163,668 + GFF5788 0.12 -2.5
163,668 + GFF5788 0.12 -1.3
163,668 + GFF5788 0.12 +0.6
163,669 - GFF5788 0.12 -0.5
163,669 - GFF5788 0.12 +0.0
164,061 + GFF5788 0.70 -0.0
164,061 + GFF5788 0.70 -0.8
164,062 - GFF5788 0.70 -0.3
164,135 + GFF5788 0.81 -0.4
164,136 - GFF5788 0.81 +0.1
164,136 - GFF5788 0.81 +1.1
164,136 - GFF5788 0.81 +0.8
164,136 - GFF5788 0.81 -0.3
164,172 + GFF5788 0.87 +0.4
164,173 - GFF5788 0.87 -0.9
164,173 - GFF5788 0.87 -0.1
164,173 - GFF5788 0.87 +0.7
164,173 - GFF5788 0.87 +0.2
164,173 - GFF5788 0.87 +0.7
164,223 + -1.1
164,223 + -0.5
164,223 + +0.3
164,223 + -1.3
164,223 + -0.3
164,223 + +0.4
164,223 + +1.7
164,224 - +0.6
164,224 - +0.5
164,224 - +0.3
164,224 - -0.3
164,224 - -0.3
164,225 + +0.5
164,225 + +0.6
164,225 + +0.7
164,225 + -0.1
164,225 + +0.2
164,225 + +0.3
164,226 - -1.0
164,231 + -0.1
164,231 + -0.5
164,241 - -0.8
164,255 - +1.7
164,289 + +1.0
164,289 + -2.6
164,289 + -0.9
164,290 - +0.6
164,290 - -0.1
164,290 - -0.2
164,290 - -1.6
164,290 - -0.8
164,648 + GFF5789 0.54 +0.6
164,648 + GFF5789 0.54 -0.2
164,648 + GFF5789 0.54 +0.3
164,648 + GFF5789 0.54 +0.5
164,648 + GFF5789 0.54 +0.3
164,649 - GFF5789 0.55 -0.3
164,649 - GFF5789 0.55 +0.8
164,681 + GFF5789 0.60 -0.4
164,682 - GFF5789 0.60 +0.7
164,706 - GFF5789 0.64 +0.1
164,706 - GFF5789 0.64 -0.1
164,825 + GFF5789 0.82 +0.9
164,826 - GFF5789 0.82 -2.4
164,927 + +0.2
164,928 - +0.1
164,944 + -0.2
164,944 + -0.6
164,945 - -0.9
165,080 - GFF5790 0.13 +0.1
165,117 + GFF5790 0.17 +0.2
165,117 + GFF5790 0.17 -1.3
165,123 + GFF5790 0.17 +0.1
165,123 + GFF5790 0.17 -1.0
165,124 - GFF5790 0.17 -0.2
165,156 + GFF5790 0.21 -1.0
165,157 - GFF5790 0.21 +0.2
165,164 + GFF5790 0.21 -1.3
165,165 - GFF5790 0.22 -0.1
165,297 + GFF5790 0.35 +0.2
165,298 - GFF5790 0.35 -0.2
165,298 - GFF5790 0.35 -0.0
165,570 + GFF5790 0.63 +0.1
165,570 + GFF5790 0.63 +0.4
165,570 + GFF5790 0.63 -0.1
165,570 + GFF5790 0.63 -0.2
165,570 + GFF5790 0.63 -0.4
165,571 - GFF5790 0.63 -0.6
165,571 - GFF5790 0.63 +0.4
165,571 - GFF5790 0.63 +0.1
165,571 - GFF5790 0.63 +0.4
165,571 - GFF5790 0.63 -0.7
165,571 - GFF5790 0.63 +0.2
165,714 + GFF5790 0.77 +0.1
165,715 - GFF5790 0.78 -1.2

Or see this region's nucleotide sequence