Strain Fitness in Variovorax sp. SCN45 around GFF5682

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5681 and GFF5682 overlap by 4 nucleotidesGFF5682 and GFF5683 are separated by 61 nucleotides GFF5681 - Predicted gluconate TRAP family transporter, DctM subunit, at 55,748 to 57,688 GFF5681 GFF5682 - TRAP-type transport system, periplasmic component, at 57,685 to 58,698 GFF5682 GFF5683 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 58,760 to 60,349 GFF5683 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1at 56.709 kb on + strand, within GFF5681at 56.709 kb on + strand, within GFF5681at 56.709 kb on + strand, within GFF5681at 56.709 kb on + strand, within GFF5681at 56.710 kb on - strand, within GFF5681at 56.710 kb on - strand, within GFF5681at 56.710 kb on - strand, within GFF5681at 56.710 kb on - strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.730 kb on + strand, within GFF5681at 56.923 kb on - strand, within GFF5681at 56.923 kb on - strand, within GFF5681at 57.015 kb on - strand, within GFF5681at 57.237 kb on + strand, within GFF5681at 57.238 kb on - strand, within GFF5681at 57.238 kb on - strand, within GFF5681at 57.238 kb on - strand, within GFF5681at 57.238 kb on - strand, within GFF5681at 57.238 kb on - strand, within GFF5681at 57.238 kb on - strand, within GFF5681at 57.238 kb on - strand, within GFF5681at 57.285 kb on + strand, within GFF5681at 57.285 kb on + strand, within GFF5681at 57.285 kb on + strand, within GFF5681at 57.286 kb on - strand, within GFF5681at 57.286 kb on - strand, within GFF5681at 57.286 kb on - strand, within GFF5681at 57.286 kb on - strand, within GFF5681at 57.286 kb on - strand, within GFF5681at 57.286 kb on - strand, within GFF5681at 57.286 kb on - strand, within GFF5681at 57.737 kb on + strandat 57.738 kb on - strandat 57.758 kb on + strandat 57.758 kb on + strandat 57.758 kb on + strandat 57.758 kb on + strandat 57.759 kb on - strandat 57.759 kb on - strandat 58.004 kb on + strand, within GFF5682at 58.004 kb on + strand, within GFF5682at 58.004 kb on + strand, within GFF5682at 58.004 kb on + strand, within GFF5682at 58.005 kb on - strand, within GFF5682at 58.005 kb on - strand, within GFF5682at 58.005 kb on - strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.020 kb on - strand, within GFF5682at 58.091 kb on + strand, within GFF5682at 58.091 kb on + strand, within GFF5682at 58.091 kb on + strand, within GFF5682at 58.092 kb on - strand, within GFF5682at 58.092 kb on - strand, within GFF5682at 58.092 kb on - strand, within GFF5682at 58.344 kb on - strand, within GFF5682at 58.344 kb on - strand, within GFF5682at 58.344 kb on - strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.598 kb on + strandat 58.598 kb on + strandat 58.598 kb on + strandat 58.598 kb on + strandat 58.598 kb on + strandat 58.599 kb on - strandat 58.599 kb on - strandat 58.709 kb on + strandat 58.709 kb on + strandat 58.709 kb on + strandat 58.709 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.812 kb on - strandat 58.812 kb on - strandat 58.812 kb on - strandat 58.812 kb on - strandat 58.815 kb on + strandat 58.815 kb on + strandat 58.837 kb on - strandat 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.113 kb on - strand, within GFF5683at 59.113 kb on - strand, within GFF5683at 59.113 kb on - strand, within GFF5683at 59.206 kb on - strand, within GFF5683at 59.415 kb on + strand, within GFF5683at 59.415 kb on + strand, within GFF5683at 59.415 kb on + strand, within GFF5683at 59.416 kb on - strand, within GFF5683at 59.416 kb on - strand, within GFF5683at 59.470 kb on - strand, within GFF5683at 59.470 kb on - strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.488 kb on - strand, within GFF5683at 59.488 kb on - strand, within GFF5683at 59.496 kb on + strand, within GFF5683at 59.496 kb on + strand, within GFF5683at 59.496 kb on + strand, within GFF5683

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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56,709 + GFF5681 0.50 +0.4
56,709 + GFF5681 0.50 +0.8
56,709 + GFF5681 0.50 -1.1
56,709 + GFF5681 0.50 +0.3
56,710 - GFF5681 0.50 -0.3
56,710 - GFF5681 0.50 -0.9
56,710 - GFF5681 0.50 +0.4
56,710 - GFF5681 0.50 -0.4
56,730 + GFF5681 0.51 -0.9
56,730 + GFF5681 0.51 -0.4
56,730 + GFF5681 0.51 +0.0
56,730 + GFF5681 0.51 +0.0
56,730 + GFF5681 0.51 -0.8
56,730 + GFF5681 0.51 -0.5
56,730 + GFF5681 0.51 -0.5
56,730 + GFF5681 0.51 +0.1
56,730 + GFF5681 0.51 +0.3
56,730 + GFF5681 0.51 +0.4
56,730 + GFF5681 0.51 +0.2
56,923 - GFF5681 0.61 -0.3
56,923 - GFF5681 0.61 +0.2
57,015 - GFF5681 0.65 -0.8
57,237 + GFF5681 0.77 -0.5
57,238 - GFF5681 0.77 -0.1
57,238 - GFF5681 0.77 +0.8
57,238 - GFF5681 0.77 -0.7
57,238 - GFF5681 0.77 -0.1
57,238 - GFF5681 0.77 -1.0
57,238 - GFF5681 0.77 -0.7
57,238 - GFF5681 0.77 +1.1
57,285 + GFF5681 0.79 +0.1
57,285 + GFF5681 0.79 -1.1
57,285 + GFF5681 0.79 +0.0
57,286 - GFF5681 0.79 -1.2
57,286 - GFF5681 0.79 -0.9
57,286 - GFF5681 0.79 -0.6
57,286 - GFF5681 0.79 -1.3
57,286 - GFF5681 0.79 -0.9
57,286 - GFF5681 0.79 +1.0
57,286 - GFF5681 0.79 -0.2
57,737 + -0.4
57,738 - -0.3
57,758 + -0.7
57,758 + +0.2
57,758 + +0.1
57,758 + +0.3
57,759 - +0.4
57,759 - +0.2
58,004 + GFF5682 0.31 -0.3
58,004 + GFF5682 0.31 +0.3
58,004 + GFF5682 0.31 -0.9
58,004 + GFF5682 0.31 +0.4
58,005 - GFF5682 0.32 -1.3
58,005 - GFF5682 0.32 +0.8
58,005 - GFF5682 0.32 -1.6
58,019 + GFF5682 0.33 -0.3
58,019 + GFF5682 0.33 -1.1
58,019 + GFF5682 0.33 -0.5
58,019 + GFF5682 0.33 -0.2
58,020 - GFF5682 0.33 -0.3
58,091 + GFF5682 0.40 -1.0
58,091 + GFF5682 0.40 -0.0
58,091 + GFF5682 0.40 +0.0
58,092 - GFF5682 0.40 +0.1
58,092 - GFF5682 0.40 +0.3
58,092 - GFF5682 0.40 +0.3
58,344 - GFF5682 0.65 -0.3
58,344 - GFF5682 0.65 -2.0
58,344 - GFF5682 0.65 -1.6
58,592 + GFF5682 0.89 +0.5
58,592 + GFF5682 0.89 -1.4
58,592 + GFF5682 0.89 -0.3
58,592 + GFF5682 0.89 +0.1
58,592 + GFF5682 0.89 -1.4
58,593 - GFF5682 0.90 +1.0
58,593 - GFF5682 0.90 -0.7
58,593 - GFF5682 0.90 +0.1
58,593 - GFF5682 0.90 -0.3
58,593 - GFF5682 0.90 -2.6
58,593 - GFF5682 0.90 +1.0
58,593 - GFF5682 0.90 -1.0
58,593 - GFF5682 0.90 -0.0
58,593 - GFF5682 0.90 +0.8
58,593 - GFF5682 0.90 -0.4
58,598 + -1.9
58,598 + -0.9
58,598 + +1.3
58,598 + -0.1
58,598 + -0.9
58,599 - -1.6
58,599 - -0.6
58,709 + -0.4
58,709 + -0.4
58,709 + -0.6
58,709 + -0.5
58,716 + -1.1
58,716 + -0.9
58,716 + +0.1
58,716 + +0.1
58,716 + +0.6
58,716 + +0.3
58,716 + +0.1
58,717 - +0.5
58,717 - -0.6
58,717 - -1.1
58,717 - +1.0
58,717 - +1.7
58,812 - -0.8
58,812 - +0.1
58,812 - +0.3
58,812 - +1.4
58,815 + -0.8
58,815 + -0.8
58,837 - -0.0
59,085 + GFF5683 0.20 -0.4
59,085 + GFF5683 0.20 -0.9
59,085 + GFF5683 0.20 -1.9
59,085 + GFF5683 0.20 -0.5
59,085 + GFF5683 0.20 -0.6
59,085 + GFF5683 0.20 +1.0
59,085 + GFF5683 0.20 -0.4
59,085 + GFF5683 0.20 +1.0
59,085 + GFF5683 0.20 -0.8
59,085 + GFF5683 0.20 +0.1
59,085 + GFF5683 0.20 -0.8
59,085 + GFF5683 0.20 +0.1
59,085 + GFF5683 0.20 +0.0
59,085 + GFF5683 0.20 +0.1
59,086 - GFF5683 0.21 +0.2
59,086 - GFF5683 0.21 -0.4
59,086 - GFF5683 0.21 -0.3
59,086 - GFF5683 0.21 +1.1
59,086 - GFF5683 0.21 -2.0
59,086 - GFF5683 0.21 +0.1
59,086 - GFF5683 0.21 -0.9
59,086 - GFF5683 0.21 +0.7
59,086 - GFF5683 0.21 -1.3
59,086 - GFF5683 0.21 +0.7
59,086 - GFF5683 0.21 -0.2
59,086 - GFF5683 0.21 -2.7
59,086 - GFF5683 0.21 +0.1
59,086 - GFF5683 0.21 +0.6
59,086 - GFF5683 0.21 +0.5
59,086 - GFF5683 0.21 +0.2
59,086 - GFF5683 0.21 -2.4
59,086 - GFF5683 0.21 +0.3
59,086 - GFF5683 0.21 -0.1
59,086 - GFF5683 0.21 +0.7
59,086 - GFF5683 0.21 +1.1
59,112 + GFF5683 0.22 +0.7
59,112 + GFF5683 0.22 +0.3
59,112 + GFF5683 0.22 +1.0
59,112 + GFF5683 0.22 -1.5
59,112 + GFF5683 0.22 -1.8
59,112 + GFF5683 0.22 +0.1
59,112 + GFF5683 0.22 -0.4
59,112 + GFF5683 0.22 -0.5
59,112 + GFF5683 0.22 -0.4
59,112 + GFF5683 0.22 -0.1
59,112 + GFF5683 0.22 -0.3
59,113 - GFF5683 0.22 -1.1
59,113 - GFF5683 0.22 -0.6
59,113 - GFF5683 0.22 +0.4
59,206 - GFF5683 0.28 +0.6
59,415 + GFF5683 0.41 +1.7
59,415 + GFF5683 0.41 +0.2
59,415 + GFF5683 0.41 +0.1
59,416 - GFF5683 0.41 +0.2
59,416 - GFF5683 0.41 -0.2
59,470 - GFF5683 0.45 -0.7
59,470 - GFF5683 0.45 +0.2
59,487 + GFF5683 0.46 -0.8
59,487 + GFF5683 0.46 -0.3
59,487 + GFF5683 0.46 -0.2
59,487 + GFF5683 0.46 -0.9
59,487 + GFF5683 0.46 +0.5
59,488 - GFF5683 0.46 +1.7
59,488 - GFF5683 0.46 -0.4
59,496 + GFF5683 0.46 +0.3
59,496 + GFF5683 0.46 -1.1
59,496 + GFF5683 0.46 -0.3

Or see this region's nucleotide sequence