Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF534 and GFF535 are separated by 137 nucleotides GFF535 and GFF536 are separated by 130 nucleotides GFF536 and GFF537 are separated by 15 nucleotides
GFF534 - Two-component system sensor histidine kinase, at 573,913 to 575,925
GFF534
GFF535 - Transcriptional regulator, AraC family, at 576,063 to 576,902
GFF535
GFF536 - no description, at 577,033 to 577,185
GFF536
GFF537 - FIG00453455: hypothetical protein, at 577,201 to 578,193
GFF537
Position (kb) 576
577 Strain fitness (log2 ratio) -2
-1
0
1
2 at 575.140 kb on + strand, within GFF534 at 575.141 kb on - strand, within GFF534 at 575.141 kb on - strand, within GFF534 at 575.141 kb on - strand, within GFF534 at 575.141 kb on - strand, within GFF534 at 575.152 kb on + strand, within GFF534 at 575.152 kb on + strand, within GFF534 at 575.153 kb on - strand, within GFF534 at 575.194 kb on + strand, within GFF534 at 575.194 kb on + strand, within GFF534 at 575.194 kb on + strand, within GFF534 at 575.194 kb on + strand, within GFF534 at 575.194 kb on + strand, within GFF534 at 575.195 kb on - strand, within GFF534 at 575.195 kb on - strand, within GFF534 at 575.195 kb on - strand, within GFF534 at 575.195 kb on - strand, within GFF534 at 575.203 kb on + strand, within GFF534 at 575.203 kb on + strand, within GFF534 at 575.203 kb on + strand, within GFF534 at 575.204 kb on - strand, within GFF534 at 575.537 kb on - strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.639 kb on + strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.640 kb on - strand, within GFF534 at 575.903 kb on + strand at 575.903 kb on + strand at 575.903 kb on + strand at 575.903 kb on + strand at 575.904 kb on - strand at 575.904 kb on - strand at 575.923 kb on + strand at 575.924 kb on - strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 576.097 kb on - strand at 576.097 kb on - strand at 576.159 kb on + strand, within GFF535 at 576.159 kb on + strand, within GFF535 at 576.159 kb on + strand, within GFF535 at 576.159 kb on + strand, within GFF535 at 576.159 kb on + strand, within GFF535 at 576.159 kb on + strand, within GFF535 at 576.159 kb on + strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.160 kb on - strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.336 kb on + strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.337 kb on - strand, within GFF535 at 576.396 kb on + strand, within GFF535 at 576.397 kb on - strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.732 kb on + strand, within GFF535 at 576.733 kb on + strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.733 kb on - strand, within GFF535 at 576.819 kb on + strand at 576.819 kb on + strand at 576.819 kb on + strand at 576.819 kb on + strand at 576.820 kb on - strand at 576.820 kb on - strand at 576.820 kb on - strand at 576.820 kb on - strand at 576.820 kb on - strand at 576.820 kb on - strand at 576.820 kb on - strand at 576.820 kb on - strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.879 kb on + strand at 576.880 kb on - strand at 576.880 kb on - strand at 576.880 kb on - strand at 576.880 kb on - strand at 576.880 kb on - strand at 576.880 kb on - strand at 576.880 kb on - strand at 576.880 kb on - strand at 577.032 kb on + strand at 577.032 kb on + strand at 577.032 kb on + strand at 577.033 kb on - strand at 577.104 kb on + strand, within GFF536 at 577.104 kb on + strand, within GFF536 at 577.105 kb on - strand, within GFF536 at 577.125 kb on + strand, within GFF536 at 577.126 kb on - strand, within GFF536 at 577.126 kb on - strand, within GFF536 at 577.126 kb on - strand, within GFF536 at 577.150 kb on + strand, within GFF536 at 577.151 kb on - strand, within GFF536 at 577.160 kb on + strand, within GFF536 at 577.170 kb on - strand at 577.187 kb on + strand at 577.187 kb on + strand at 577.187 kb on + strand at 577.187 kb on + strand at 577.188 kb on - strand at 577.188 kb on - strand at 577.188 kb on - strand at 577.188 kb on - strand at 577.188 kb on - strand at 577.265 kb on + strand at 577.266 kb on - strand at 577.276 kb on + strand at 577.276 kb on + strand at 577.277 kb on - strand at 577.284 kb on + strand at 577.369 kb on + strand, within GFF537 at 577.369 kb on + strand, within GFF537 at 577.370 kb on - strand, within GFF537 at 577.370 kb on - strand, within GFF537 at 577.370 kb on - strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.432 kb on + strand, within GFF537 at 577.433 kb on - strand, within GFF537 at 577.433 kb on - strand, within GFF537 at 577.433 kb on - strand, within GFF537 at 577.433 kb on - strand, within GFF537 at 577.433 kb on - strand, within GFF537 at 577.477 kb on + strand, within GFF537 at 577.477 kb on + strand, within GFF537 at 577.477 kb on + strand, within GFF537 at 577.477 kb on + strand, within GFF537 at 577.477 kb on + strand, within GFF537 at 577.478 kb on - strand, within GFF537 at 577.478 kb on - strand, within GFF537 at 577.478 kb on - strand, within GFF537 at 577.479 kb on + strand, within GFF537 at 577.519 kb on - strand, within GFF537 at 577.528 kb on + strand, within GFF537 at 577.564 kb on + strand, within GFF537 at 577.564 kb on + strand, within GFF537 at 577.565 kb on - strand, within GFF537 at 577.624 kb on + strand, within GFF537 at 577.624 kb on + strand, within GFF537 at 577.624 kb on + strand, within GFF537 at 577.624 kb on + strand, within GFF537 at 577.624 kb on + strand, within GFF537 at 577.625 kb on - strand, within GFF537 at 577.625 kb on - strand, within GFF537 at 577.868 kb on + strand, within GFF537 at 577.868 kb on + strand, within GFF537 at 577.869 kb on - strand, within GFF537 at 577.869 kb on - strand, within GFF537
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 575,140 + GFF534 0.61 -0.3 575,141 - GFF534 0.61 +1.1 575,141 - GFF534 0.61 +0.1 575,141 - GFF534 0.61 -0.1 575,141 - GFF534 0.61 -0.7 575,152 + GFF534 0.62 -1.5 575,152 + GFF534 0.62 +0.3 575,153 - GFF534 0.62 -0.8 575,194 + GFF534 0.64 -0.4 575,194 + GFF534 0.64 +1.2 575,194 + GFF534 0.64 +0.9 575,194 + GFF534 0.64 -0.3 575,194 + GFF534 0.64 -0.1 575,195 - GFF534 0.64 -0.8 575,195 - GFF534 0.64 +0.1 575,195 - GFF534 0.64 -0.8 575,195 - GFF534 0.64 -2.3 575,203 + GFF534 0.64 -0.1 575,203 + GFF534 0.64 -1.2 575,203 + GFF534 0.64 -0.0 575,204 - GFF534 0.64 -0.3 575,537 - GFF534 0.81 -1.1 575,639 + GFF534 0.86 +1.3 575,639 + GFF534 0.86 -0.7 575,639 + GFF534 0.86 +0.2 575,639 + GFF534 0.86 -0.4 575,639 + GFF534 0.86 +0.3 575,639 + GFF534 0.86 -0.6 575,639 + GFF534 0.86 +0.3 575,639 + GFF534 0.86 +0.9 575,639 + GFF534 0.86 -0.1 575,639 + GFF534 0.86 -1.6 575,639 + GFF534 0.86 -0.4 575,639 + GFF534 0.86 -0.4 575,640 - GFF534 0.86 -0.1 575,640 - GFF534 0.86 -0.3 575,640 - GFF534 0.86 -0.5 575,640 - GFF534 0.86 -2.1 575,640 - GFF534 0.86 +0.3 575,640 - GFF534 0.86 -0.3 575,640 - GFF534 0.86 -0.3 575,640 - GFF534 0.86 +1.7 575,640 - GFF534 0.86 +0.5 575,640 - GFF534 0.86 -1.9 575,640 - GFF534 0.86 +0.8 575,640 - GFF534 0.86 -1.0 575,640 - GFF534 0.86 -0.6 575,640 - GFF534 0.86 +0.2 575,640 - GFF534 0.86 -0.6 575,640 - GFF534 0.86 -0.1 575,640 - GFF534 0.86 -1.3 575,903 + -0.4 575,903 + +0.9 575,903 + -0.6 575,903 + +0.2 575,904 - -0.1 575,904 - -0.0 575,923 + +1.9 575,924 - +0.3 575,998 + +0.3 575,998 + -0.4 575,998 + -0.7 575,998 + +0.7 575,998 + +0.3 575,998 + -2.0 575,998 + -0.6 575,999 - +0.1 575,999 - -1.3 575,999 - -0.3 575,999 - -0.8 575,999 - -0.3 575,999 - +0.9 575,999 - -1.1 575,999 - -0.2 575,999 - -0.7 575,999 - -0.7 575,999 - -0.5 575,999 - +0.5 576,097 - -0.0 576,097 - -0.7 576,159 + GFF535 0.11 -0.3 576,159 + GFF535 0.11 -0.7 576,159 + GFF535 0.11 +0.0 576,159 + GFF535 0.11 -0.6 576,159 + GFF535 0.11 -0.1 576,159 + GFF535 0.11 +0.5 576,159 + GFF535 0.11 -0.1 576,160 - GFF535 0.12 +0.8 576,160 - GFF535 0.12 -0.1 576,160 - GFF535 0.12 -0.8 576,160 - GFF535 0.12 +0.6 576,160 - GFF535 0.12 -0.6 576,160 - GFF535 0.12 +0.2 576,160 - GFF535 0.12 -0.7 576,160 - GFF535 0.12 +0.2 576,160 - GFF535 0.12 +0.0 576,160 - GFF535 0.12 -1.2 576,160 - GFF535 0.12 +1.1 576,160 - GFF535 0.12 -0.3 576,160 - GFF535 0.12 +0.4 576,160 - GFF535 0.12 -2.0 576,160 - GFF535 0.12 +0.2 576,336 + GFF535 0.33 +0.3 576,336 + GFF535 0.33 -0.6 576,336 + GFF535 0.33 -0.2 576,336 + GFF535 0.33 +0.4 576,336 + GFF535 0.33 -0.3 576,336 + GFF535 0.33 -0.1 576,336 + GFF535 0.33 +0.0 576,336 + GFF535 0.33 -1.0 576,336 + GFF535 0.33 -1.4 576,336 + GFF535 0.33 +0.8 576,336 + GFF535 0.33 -0.8 576,336 + GFF535 0.33 +1.9 576,336 + GFF535 0.33 -0.1 576,336 + GFF535 0.33 +1.5 576,336 + GFF535 0.33 +0.3 576,336 + GFF535 0.33 +0.3 576,336 + GFF535 0.33 -0.5 576,337 - GFF535 0.33 -1.0 576,337 - GFF535 0.33 +0.3 576,337 - GFF535 0.33 -0.0 576,337 - GFF535 0.33 -0.7 576,337 - GFF535 0.33 +0.1 576,337 - GFF535 0.33 +0.2 576,337 - GFF535 0.33 -0.1 576,337 - GFF535 0.33 -0.6 576,396 + GFF535 0.40 -0.5 576,397 - GFF535 0.40 -1.5 576,732 + GFF535 0.80 +0.2 576,732 + GFF535 0.80 +0.1 576,732 + GFF535 0.80 +0.3 576,732 + GFF535 0.80 -0.4 576,732 + GFF535 0.80 -2.6 576,732 + GFF535 0.80 -1.2 576,732 + GFF535 0.80 +0.3 576,732 + GFF535 0.80 +0.2 576,732 + GFF535 0.80 +0.1 576,732 + GFF535 0.80 -0.3 576,732 + GFF535 0.80 +1.3 576,732 + GFF535 0.80 +0.1 576,732 + GFF535 0.80 -0.9 576,732 + GFF535 0.80 -0.3 576,732 + GFF535 0.80 -0.1 576,732 + GFF535 0.80 -0.7 576,732 + GFF535 0.80 +0.9 576,732 + GFF535 0.80 -0.5 576,732 + GFF535 0.80 +0.7 576,732 + GFF535 0.80 +0.6 576,732 + GFF535 0.80 +0.3 576,732 + GFF535 0.80 +0.8 576,732 + GFF535 0.80 -0.6 576,733 + GFF535 0.80 -0.2 576,733 - GFF535 0.80 -0.1 576,733 - GFF535 0.80 -0.3 576,733 - GFF535 0.80 -0.9 576,733 - GFF535 0.80 -0.1 576,733 - GFF535 0.80 +0.5 576,733 - GFF535 0.80 -0.3 576,733 - GFF535 0.80 +1.0 576,733 - GFF535 0.80 +0.0 576,733 - GFF535 0.80 -1.0 576,733 - GFF535 0.80 -0.3 576,733 - GFF535 0.80 +0.1 576,733 - GFF535 0.80 +0.0 576,733 - GFF535 0.80 -0.8 576,733 - GFF535 0.80 -0.3 576,733 - GFF535 0.80 -1.5 576,733 - GFF535 0.80 +0.6 576,733 - GFF535 0.80 -0.4 576,733 - GFF535 0.80 +0.2 576,733 - GFF535 0.80 +0.3 576,819 + +0.3 576,819 + +0.0 576,819 + +0.4 576,819 + -0.1 576,820 - -0.6 576,820 - +0.3 576,820 - -0.6 576,820 - -0.7 576,820 - -0.3 576,820 - +0.0 576,820 - -1.6 576,820 - -0.3 576,879 + -1.0 576,879 + +1.1 576,879 + +1.0 576,879 + +0.9 576,879 + -0.9 576,879 + -1.3 576,879 + -0.3 576,879 + -0.4 576,879 + +0.4 576,879 + +0.3 576,879 + +0.3 576,879 + +0.1 576,879 + -1.5 576,880 - -0.8 576,880 - +0.3 576,880 - -0.2 576,880 - -0.0 576,880 - -0.9 576,880 - +0.1 576,880 - -0.0 576,880 - -1.0 577,032 + +0.1 577,032 + +0.9 577,032 + -0.9 577,033 - -1.5 577,104 + GFF536 0.46 +0.3 577,104 + GFF536 0.46 +1.3 577,105 - GFF536 0.47 -0.5 577,125 + GFF536 0.60 -0.4 577,126 - GFF536 0.61 -0.5 577,126 - GFF536 0.61 +0.1 577,126 - GFF536 0.61 -0.5 577,150 + GFF536 0.76 +1.3 577,151 - GFF536 0.77 -0.8 577,160 + GFF536 0.83 -0.4 577,170 - -0.2 577,187 + +0.1 577,187 + +0.0 577,187 + +1.6 577,187 + +0.2 577,188 - +0.3 577,188 - -0.7 577,188 - -0.8 577,188 - +1.7 577,188 - -0.5 577,265 + +0.2 577,266 - -0.0 577,276 + -0.9 577,276 + -0.4 577,277 - -0.6 577,284 + -0.6 577,369 + GFF537 0.17 -0.4 577,369 + GFF537 0.17 +0.1 577,370 - GFF537 0.17 -0.4 577,370 - GFF537 0.17 +0.6 577,370 - GFF537 0.17 +0.2 577,432 + GFF537 0.23 -1.3 577,432 + GFF537 0.23 -1.0 577,432 + GFF537 0.23 +0.2 577,432 + GFF537 0.23 -0.6 577,432 + GFF537 0.23 +0.8 577,432 + GFF537 0.23 +0.7 577,432 + GFF537 0.23 +0.3 577,432 + GFF537 0.23 +0.7 577,432 + GFF537 0.23 -2.1 577,433 - GFF537 0.23 -2.3 577,433 - GFF537 0.23 -2.3 577,433 - GFF537 0.23 -0.5 577,433 - GFF537 0.23 -0.3 577,433 - GFF537 0.23 -0.3 577,477 + GFF537 0.28 -0.6 577,477 + GFF537 0.28 -1.3 577,477 + GFF537 0.28 -0.8 577,477 + GFF537 0.28 -1.1 577,477 + GFF537 0.28 -0.0 577,478 - GFF537 0.28 +0.3 577,478 - GFF537 0.28 +0.1 577,478 - GFF537 0.28 -0.6 577,479 + GFF537 0.28 -0.6 577,519 - GFF537 0.32 -1.4 577,528 + GFF537 0.33 +0.3 577,564 + GFF537 0.37 +0.1 577,564 + GFF537 0.37 +0.1 577,565 - GFF537 0.37 -0.6 577,624 + GFF537 0.43 -0.4 577,624 + GFF537 0.43 -0.1 577,624 + GFF537 0.43 +0.4 577,624 + GFF537 0.43 +0.5 577,624 + GFF537 0.43 +1.6 577,625 - GFF537 0.43 -0.7 577,625 - GFF537 0.43 -0.4 577,868 + GFF537 0.67 -1.3 577,868 + GFF537 0.67 +2.3 577,869 - GFF537 0.67 +0.1 577,869 - GFF537 0.67 -1.1
Or see this region's nucleotide sequence