Strain Fitness in Variovorax sp. SCN45 around GFF5240

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
104,650	+		GFF5238	0.42	-0.1
104,650	+		GFF5238	0.42	+2.5
104,651	-		GFF5238	0.42	-0.2
105,440	+		GFF5239	0.72	-1.3
105,440	+		GFF5239	0.72	+0.2
105,441	-		GFF5239	0.72	+0.2
105,441	-		GFF5239	0.72	-1.1
105,454	-		GFF5239	0.78	+0.2
105,454	-		GFF5239	0.78	+0.4
105,618	+				-0.0
105,618	+				-1.3
105,619	-				-0.3
105,667	+		GFF5240	0.13	+1.0
105,668	-		GFF5240	0.13	+0.1
105,668	-		GFF5240	0.13	-0.7
105,668	-		GFF5240	0.13	-1.4
105,668	-		GFF5240	0.13	+1.5
105,895	+		GFF5240	0.37	+0.1
105,895	+		GFF5240	0.37	-0.2
105,895	+		GFF5240	0.37	+0.8
105,895	+		GFF5240	0.37	-0.3
105,895	+		GFF5240	0.37	-0.1
105,896	-		GFF5240	0.37	-1.3
105,896	-		GFF5240	0.37	+0.1
107,105	+		GFF5241	0.85	+0.2
107,105	+		GFF5241	0.85	+0.0
107,105	+		GFF5241	0.85	+0.1
107,106	-		GFF5241	0.86	-0.5
107,210	+				-0.7
107,210	+				+0.8
107,211	-				+0.7
107,211	-				-2.4