Strain Fitness in Variovorax sp. SCN45 around GFF5014

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
115,799	+		GFF5013	0.17	+0.2
115,799	+		GFF5013	0.17	+0.6
115,799	+		GFF5013	0.17	+0.0
115,800	-		GFF5013	0.17	+0.0
115,800	-		GFF5013	0.17	-0.1
115,805	+		GFF5013	0.17	-0.4
115,805	+		GFF5013	0.17	+0.8
115,805	+		GFF5013	0.17	-1.6
115,805	+		GFF5013	0.17	+1.0
115,805	+		GFF5013	0.17	-0.7
115,805	+		GFF5013	0.17	-0.2
115,805	+		GFF5013	0.17	-0.3
115,805	+		GFF5013	0.17	-1.2
115,805	+		GFF5013	0.17	-0.1
115,805	+		GFF5013	0.17	-0.4
115,805	+		GFF5013	0.17	+0.8
115,806	-		GFF5013	0.17	-0.0
115,806	-		GFF5013	0.17	-0.3
115,806	-		GFF5013	0.17	-0.3
115,806	-		GFF5013	0.17	-0.7
115,806	-		GFF5013	0.17	+0.1
116,048	+		GFF5013	0.38	-1.4
116,048	+		GFF5013	0.38	+0.1
116,048	+		GFF5013	0.38	-1.9
116,048	+		GFF5013	0.38	-0.6
116,048	+		GFF5013	0.38	+2.6
116,048	+		GFF5013	0.38	-0.6
116,049	-		GFF5013	0.38	+1.3
116,049	-		GFF5013	0.38	-0.7
116,211	+		GFF5013	0.52	-0.3
116,211	+		GFF5013	0.52	-0.7
116,211	+		GFF5013	0.52	-2.1
116,212	-		GFF5013	0.52	-0.4
116,212	-		GFF5013	0.52	+0.1
116,212	-		GFF5013	0.52	-0.1
116,212	-		GFF5013	0.52	-0.1
116,212	-		GFF5013	0.52	-0.1
116,212	-		GFF5013	0.52	+1.2
116,212	-		GFF5013	0.52	-0.2
116,212	-		GFF5013	0.52	-0.4
116,243	+		GFF5013	0.55	+0.4
116,243	+		GFF5013	0.55	+0.2
116,243	+		GFF5013	0.55	-0.5
116,243	+		GFF5013	0.55	-1.1
116,244	-		GFF5013	0.55	+0.7
116,244	-		GFF5013	0.55	-0.7
116,244	-		GFF5013	0.55	+0.0
116,244	-		GFF5013	0.55	-0.9
116,244	-		GFF5013	0.55	-1.1
116,244	-		GFF5013	0.55	+0.8
116,244	-		GFF5013	0.55	+1.2
116,256	+		GFF5013	0.56	+1.2
116,256	+		GFF5013	0.56	-0.5
116,256	+		GFF5013	0.56	+0.0
116,256	+		GFF5013	0.56	-0.7
116,256	+		GFF5013	0.56	-1.0
116,257	-		GFF5013	0.56	-0.4
116,257	-		GFF5013	0.56	-0.4
116,257	-		GFF5013	0.56	-0.7
116,257	-		GFF5013	0.56	-0.8
116,257	-		GFF5013	0.56	-1.3
116,257	-		GFF5013	0.56	-0.3
116,257	-		GFF5013	0.56	-0.4
116,257	-		GFF5013	0.56	+0.4
116,257	-		GFF5013	0.56	-0.9
116,273	+		GFF5013	0.57	+1.3
116,307	-		GFF5013	0.60	-0.7
116,307	-		GFF5013	0.60	+0.5
116,307	-		GFF5013	0.60	+0.1
116,307	-		GFF5013	0.60	+0.4
116,478	-		GFF5013	0.75	-1.3
116,504	+		GFF5013	0.77	-0.4
116,504	+		GFF5013	0.77	+0.6
116,504	+		GFF5013	0.77	+0.2
116,504	+		GFF5013	0.77	+0.2
116,505	-		GFF5013	0.77	-0.2
116,505	-		GFF5013	0.77	+0.9
116,505	-		GFF5013	0.77	+0.2
116,898	+		GFF5014	0.10	-0.4
116,899	-		GFF5014	0.11	+0.0
116,899	-		GFF5014	0.11	+0.1
116,899	-		GFF5014	0.11	-0.3
116,970	+		GFF5014	0.17	+0.7
116,970	+		GFF5014	0.17	-2.0
116,971	-		GFF5014	0.17	-0.0
117,231	+		GFF5014	0.39	+0.6
117,231	+		GFF5014	0.39	+0.7
117,231	+		GFF5014	0.39	+0.7
117,231	+		GFF5014	0.39	+0.2
117,231	+		GFF5014	0.39	-1.8
117,231	+		GFF5014	0.39	-0.4
117,231	+		GFF5014	0.39	+0.7
117,232	-		GFF5014	0.39	-1.1
117,232	-		GFF5014	0.39	-1.7
117,232	-		GFF5014	0.39	+0.6
117,232	-		GFF5014	0.39	-0.1
117,232	-		GFF5014	0.39	+1.4
117,232	-		GFF5014	0.39	-0.3
117,232	-		GFF5014	0.39	+0.3
117,232	-		GFF5014	0.39	-0.5
117,416	+		GFF5014	0.55	-0.7
117,416	+		GFF5014	0.55	-0.2
117,416	+		GFF5014	0.55	+0.6
117,417	-		GFF5014	0.55	-0.3
117,417	-		GFF5014	0.55	+0.3
117,417	-		GFF5014	0.55	-0.3
117,417	-		GFF5014	0.55	+0.9
117,417	-		GFF5014	0.55	-0.1
117,417	-		GFF5014	0.55	-0.5
117,453	+		GFF5014	0.58	-1.0
117,453	+		GFF5014	0.58	-0.2
117,453	+		GFF5014	0.58	+0.0
117,453	+		GFF5014	0.58	-0.5
117,453	+		GFF5014	0.58	-2.1
117,454	-		GFF5014	0.58	+0.9
117,683	-		GFF5014	0.77	+0.1
117,867	+				+1.3
117,867	+				-0.1
117,867	+				-0.3
117,868	-				+0.7
117,868	-				-0.7
117,868	-				+1.0
117,948	+				-0.8
117,949	-				-0.8
117,949	-				+0.9
117,949	-				-0.0
118,095	+				-0.3
118,095	+				-1.6
118,112	+		GFF5015	0.11	-0.4
118,112	+		GFF5015	0.11	+0.6
118,113	-		GFF5015	0.12	+0.2
118,113	-		GFF5015	0.12	-1.0
118,113	-		GFF5015	0.12	-0.4
118,295	+		GFF5015	0.36	-0.3
118,295	+		GFF5015	0.36	+0.2
118,296	-		GFF5015	0.36	-1.4
118,296	-		GFF5015	0.36	-0.5
118,505	+		GFF5015	0.63	+0.6
118,682	+		GFF5015	0.87	+0.0
118,682	+		GFF5015	0.87	-1.1
118,683	-		GFF5015	0.87	+0.5
118,683	-		GFF5015	0.87	+0.5