Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4901 and GFF4902 are separated by 765 nucleotides GFF4902 and GFF4903 overlap by 4 nucleotides GFF4903 and GFF4904 are separated by 44 nucleotides GFF4904 and GFF4905 are separated by 16 nucleotides
GFF4901 - no description, at 266,438 to 266,692
GFF4901
GFF4902 - hypothetical protein, at 267,458 to 268,879
GFF4902
GFF4903 - no description, at 268,876 to 269,082
GFF4903
GFF4904 - hypothetical protein, at 269,127 to 269,723
GFF4904
GFF4905 - hypothetical protein, at 269,740 to 271,149
GFF4905
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.475 kb on + strand, within GFF4901 at 266.475 kb on + strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.496 kb on + strand, within GFF4901 at 266.496 kb on + strand, within GFF4901 at 266.496 kb on + strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.528 kb on + strand, within GFF4901 at 266.528 kb on + strand, within GFF4901 at 266.652 kb on - strand, within GFF4901 at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.913 kb on - strand at 266.980 kb on + strand at 266.981 kb on - strand at 266.981 kb on - strand at 266.981 kb on - strand at 267.031 kb on + strand at 267.031 kb on + strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.037 kb on - strand at 267.037 kb on - strand at 267.037 kb on - strand at 267.037 kb on - strand at 267.043 kb on + strand at 267.043 kb on + strand at 267.044 kb on - strand at 267.046 kb on + strand at 267.047 kb on - strand at 267.072 kb on + strand at 267.073 kb on - strand at 267.073 kb on - strand at 267.073 kb on - strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.198 kb on + strand at 267.198 kb on + strand at 267.198 kb on + strand at 267.199 kb on - strand at 267.199 kb on - strand at 267.199 kb on - strand at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.681 kb on - strand, within GFF4902 at 267.681 kb on - strand, within GFF4902 at 267.681 kb on - strand, within GFF4902 at 267.719 kb on + strand, within GFF4902 at 267.719 kb on + strand, within GFF4902 at 267.719 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.206 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.448 kb on + strand, within GFF4902 at 268.448 kb on + strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.802 kb on + strand at 268.802 kb on + strand at 269.024 kb on - strand, within GFF4903 at 269.126 kb on + strand at 269.126 kb on + strand at 269.127 kb on - strand at 269.140 kb on + strand at 269.371 kb on - strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.660 kb on + strand, within GFF4904 at 269.661 kb on - strand, within GFF4904
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 266,475 + GFF4901 0.15 +0.4 266,475 + GFF4901 0.15 -0.5 266,476 - GFF4901 0.15 -0.5 266,476 - GFF4901 0.15 +1.1 266,476 - GFF4901 0.15 -0.2 266,476 - GFF4901 0.15 -1.8 266,476 - GFF4901 0.15 -0.6 266,496 + GFF4901 0.23 +0.8 266,496 + GFF4901 0.23 -1.3 266,496 + GFF4901 0.23 +1.0 266,497 - GFF4901 0.23 -0.9 266,497 - GFF4901 0.23 -0.8 266,497 - GFF4901 0.23 -0.8 266,497 - GFF4901 0.23 +1.1 266,497 - GFF4901 0.23 -0.3 266,498 + GFF4901 0.24 -0.1 266,498 + GFF4901 0.24 +0.7 266,498 + GFF4901 0.24 +0.1 266,498 + GFF4901 0.24 +1.1 266,498 + GFF4901 0.24 +0.5 266,499 - GFF4901 0.24 +0.4 266,499 - GFF4901 0.24 -0.4 266,499 - GFF4901 0.24 -0.3 266,499 - GFF4901 0.24 -1.1 266,528 + GFF4901 0.35 +0.2 266,528 + GFF4901 0.35 -0.2 266,652 - GFF4901 0.84 -0.8 266,761 + -0.8 266,761 + -1.0 266,761 + -0.5 266,761 + +1.2 266,761 + -0.2 266,761 + -1.3 266,761 + -0.7 266,761 + +0.6 266,761 + +0.2 266,761 + +0.1 266,761 + +0.1 266,761 + -0.5 266,761 + +1.4 266,761 + +0.1 266,761 + -0.9 266,761 + +0.2 266,761 + +0.5 266,761 + +2.0 266,761 + -0.4 266,762 - +0.1 266,762 - -0.1 266,762 - -0.3 266,762 - -0.2 266,762 - -1.2 266,762 - -0.3 266,762 - +0.4 266,762 - -1.1 266,762 - -0.8 266,762 - +0.8 266,762 - -1.2 266,762 - -0.0 266,762 - -0.2 266,762 - +0.7 266,762 - -0.2 266,780 + +0.6 266,780 + -1.3 266,780 + +0.4 266,780 + +0.3 266,780 + +0.2 266,780 + -0.0 266,780 + -0.0 266,780 + +0.3 266,780 + +0.1 266,780 + +0.5 266,780 + -0.6 266,780 + -1.2 266,780 + -0.6 266,781 - -0.1 266,781 - -2.1 266,781 - +0.2 266,781 - -1.8 266,781 - +0.7 266,781 - +2.1 266,781 - +0.7 266,781 - -0.2 266,781 - -0.5 266,781 - -0.0 266,781 - -0.5 266,781 - +0.9 266,913 - +1.8 266,980 + +0.0 266,981 - -0.7 266,981 - -1.3 266,981 - +0.4 267,031 + -0.5 267,031 + -1.9 267,032 - -0.6 267,032 - -1.8 267,032 - -1.2 267,036 + -0.6 267,036 + +0.1 267,036 + -0.6 267,036 + -0.8 267,036 + +0.8 267,036 + +0.7 267,036 + -0.0 267,037 - -2.1 267,037 - -1.1 267,037 - +0.6 267,037 - -1.1 267,043 + -0.4 267,043 + -0.4 267,044 - -0.4 267,046 + -0.2 267,047 - -0.4 267,072 + -0.7 267,073 - -1.4 267,073 - -0.3 267,073 - +1.4 267,120 + +1.4 267,120 + +0.4 267,120 + -0.0 267,120 + -0.2 267,120 + -1.5 267,120 + -1.2 267,120 + -0.2 267,121 - -1.5 267,121 - +0.2 267,121 - +0.8 267,121 - -1.0 267,121 - -0.0 267,121 - +0.2 267,121 - +1.1 267,121 - -0.3 267,198 + -0.2 267,198 + -0.5 267,198 + +1.1 267,199 - +0.5 267,199 - -0.5 267,199 - -0.6 267,680 + GFF4902 0.16 -0.4 267,680 + GFF4902 0.16 +1.4 267,680 + GFF4902 0.16 -0.2 267,680 + GFF4902 0.16 +0.4 267,680 + GFF4902 0.16 -0.3 267,680 + GFF4902 0.16 +0.0 267,681 - GFF4902 0.16 +0.6 267,681 - GFF4902 0.16 -0.6 267,681 - GFF4902 0.16 -0.9 267,719 + GFF4902 0.18 +0.1 267,719 + GFF4902 0.18 -0.6 267,719 + GFF4902 0.18 +0.1 268,205 + GFF4902 0.53 -0.4 268,205 + GFF4902 0.53 -1.4 268,205 + GFF4902 0.53 +0.3 268,205 + GFF4902 0.53 +1.1 268,205 + GFF4902 0.53 -0.2 268,206 - GFF4902 0.53 +0.2 268,270 - GFF4902 0.57 +0.2 268,270 - GFF4902 0.57 +0.4 268,270 - GFF4902 0.57 -0.4 268,270 - GFF4902 0.57 +0.7 268,270 - GFF4902 0.57 +1.0 268,448 + GFF4902 0.70 -0.8 268,448 + GFF4902 0.70 -0.5 268,449 - GFF4902 0.70 +0.5 268,449 - GFF4902 0.70 -0.2 268,449 - GFF4902 0.70 -0.1 268,802 + -0.3 268,802 + -0.8 269,024 - GFF4903 0.71 +0.3 269,126 + +0.1 269,126 + -1.0 269,127 - +0.6 269,140 + -0.4 269,371 - GFF4904 0.41 +0.6 269,385 + GFF4904 0.43 -1.5 269,385 + GFF4904 0.43 +0.3 269,385 + GFF4904 0.43 -0.3 269,385 + GFF4904 0.43 -1.3 269,385 + GFF4904 0.43 -1.2 269,385 + GFF4904 0.43 -0.1 269,386 - GFF4904 0.43 -0.2 269,386 - GFF4904 0.43 -1.1 269,386 - GFF4904 0.43 -0.1 269,386 - GFF4904 0.43 +0.4 269,386 - GFF4904 0.43 +0.4 269,386 - GFF4904 0.43 -1.2 269,400 + GFF4904 0.46 -1.2 269,400 + GFF4904 0.46 +0.3 269,400 + GFF4904 0.46 -0.8 269,400 + GFF4904 0.46 -0.9 269,400 + GFF4904 0.46 -0.3 269,401 - GFF4904 0.46 +1.4 269,401 - GFF4904 0.46 +0.3 269,401 - GFF4904 0.46 -0.3 269,401 - GFF4904 0.46 -0.4 269,401 - GFF4904 0.46 +0.1 269,401 - GFF4904 0.46 +0.1 269,401 - GFF4904 0.46 -0.8 269,415 + GFF4904 0.48 -0.3 269,415 + GFF4904 0.48 +0.3 269,415 + GFF4904 0.48 -1.8 269,415 + GFF4904 0.48 +2.2 269,415 + GFF4904 0.48 -0.7 269,416 - GFF4904 0.48 -0.5 269,416 - GFF4904 0.48 -1.2 269,416 - GFF4904 0.48 +0.4 269,416 - GFF4904 0.48 +0.4 269,416 - GFF4904 0.48 -0.6 269,660 + GFF4904 0.89 -0.5 269,661 - GFF4904 0.89 +1.0
Or see this region's nucleotide sequence