Strain Fitness in Variovorax sp. SCN45 around GFF4727

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4726 and GFF4727 are separated by 136 nucleotidesGFF4727 and GFF4728 overlap by 4 nucleotides GFF4726 - hypothetical protein, at 87,965 to 90,379 GFF4726 GFF4727 - Two-component transcriptional response regulator, LuxR family, at 90,516 to 91,151 GFF4727 GFF4728 - Two-component system sensor histidine kinase, at 91,148 to 92,233 GFF4728 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 89.530 kb on - strand, within GFF4726at 89.562 kb on + strand, within GFF4726at 89.562 kb on + strand, within GFF4726at 89.562 kb on + strand, within GFF4726at 89.634 kb on + strand, within GFF4726at 89.635 kb on - strand, within GFF4726at 89.635 kb on - strand, within GFF4726at 89.635 kb on - strand, within GFF4726at 89.635 kb on - strand, within GFF4726at 89.635 kb on - strand, within GFF4726at 89.640 kb on + strand, within GFF4726at 89.640 kb on + strand, within GFF4726at 89.640 kb on + strand, within GFF4726at 89.641 kb on - strand, within GFF4726at 89.641 kb on - strand, within GFF4726at 89.641 kb on - strand, within GFF4726at 89.760 kb on + strand, within GFF4726at 89.760 kb on + strand, within GFF4726at 89.761 kb on - strand, within GFF4726at 89.761 kb on - strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.793 kb on + strand, within GFF4726at 89.794 kb on - strand, within GFF4726at 89.794 kb on - strand, within GFF4726at 89.794 kb on - strand, within GFF4726at 89.794 kb on - strand, within GFF4726at 89.794 kb on - strand, within GFF4726at 89.794 kb on - strand, within GFF4726at 89.794 kb on - strand, within GFF4726at 89.796 kb on + strand, within GFF4726at 89.796 kb on + strand, within GFF4726at 89.796 kb on + strand, within GFF4726at 89.797 kb on - strand, within GFF4726at 89.797 kb on - strand, within GFF4726at 89.797 kb on - strand, within GFF4726at 89.797 kb on - strand, within GFF4726at 89.797 kb on - strand, within GFF4726at 89.799 kb on + strand, within GFF4726at 89.799 kb on + strand, within GFF4726at 89.799 kb on + strand, within GFF4726at 89.800 kb on - strand, within GFF4726at 89.808 kb on + strand, within GFF4726at 89.808 kb on + strand, within GFF4726at 89.808 kb on + strand, within GFF4726at 89.809 kb on - strand, within GFF4726at 89.836 kb on - strand, within GFF4726at 89.836 kb on - strand, within GFF4726at 89.872 kb on - strand, within GFF4726at 89.874 kb on + strand, within GFF4726at 89.874 kb on + strand, within GFF4726at 89.874 kb on + strand, within GFF4726at 89.875 kb on - strand, within GFF4726at 89.875 kb on - strand, within GFF4726at 89.875 kb on - strand, within GFF4726at 89.982 kb on + strand, within GFF4726at 89.982 kb on + strand, within GFF4726at 89.982 kb on + strand, within GFF4726at 89.983 kb on - strand, within GFF4726at 89.983 kb on - strand, within GFF4726at 90.198 kb on + strandat 90.199 kb on - strandat 90.199 kb on - strandat 90.199 kb on - strandat 90.445 kb on + strandat 90.445 kb on + strandat 90.446 kb on - strandat 90.544 kb on + strandat 90.545 kb on - strandat 90.601 kb on + strand, within GFF4727at 90.602 kb on - strand, within GFF4727at 90.850 kb on + strand, within GFF4727at 90.901 kb on + strand, within GFF4727at 90.901 kb on + strand, within GFF4727at 90.901 kb on + strand, within GFF4727at 90.902 kb on - strand, within GFF4727at 90.902 kb on - strand, within GFF4727at 90.902 kb on - strand, within GFF4727at 90.902 kb on - strand, within GFF4727at 90.902 kb on - strand, within GFF4727at 90.916 kb on + strand, within GFF4727at 91.249 kb on - strandat 91.664 kb on + strand, within GFF4728at 91.758 kb on + strand, within GFF4728at 91.850 kb on + strand, within GFF4728at 91.850 kb on + strand, within GFF4728at 91.851 kb on - strand, within GFF4728at 91.851 kb on - strand, within GFF4728at 92.010 kb on + strand, within GFF4728at 92.011 kb on - strand, within GFF4728at 92.034 kb on + strand, within GFF4728at 92.034 kb on + strand, within GFF4728at 92.035 kb on - strand, within GFF4728at 92.035 kb on - strand, within GFF4728at 92.037 kb on + strand, within GFF4728at 92.037 kb on + strand, within GFF4728at 92.038 kb on - strand, within GFF4728at 92.122 kb on - strand, within GFF4728at 92.122 kb on - strand, within GFF4728at 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.148 kb on + strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strandat 92.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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89,530 - GFF4726 0.65 +0.0
89,562 + GFF4726 0.66 -1.4
89,562 + GFF4726 0.66 -0.6
89,562 + GFF4726 0.66 -0.2
89,634 + GFF4726 0.69 -0.7
89,635 - GFF4726 0.69 -0.6
89,635 - GFF4726 0.69 +0.4
89,635 - GFF4726 0.69 -0.8
89,635 - GFF4726 0.69 +1.4
89,635 - GFF4726 0.69 +0.6
89,640 + GFF4726 0.69 -2.4
89,640 + GFF4726 0.69 -0.1
89,640 + GFF4726 0.69 -0.6
89,641 - GFF4726 0.69 -0.2
89,641 - GFF4726 0.69 -0.1
89,641 - GFF4726 0.69 -0.8
89,760 + GFF4726 0.74 -0.8
89,760 + GFF4726 0.74 +0.3
89,761 - GFF4726 0.74 -0.3
89,761 - GFF4726 0.74 -1.6
89,793 + GFF4726 0.76 -0.9
89,793 + GFF4726 0.76 +1.8
89,793 + GFF4726 0.76 +0.5
89,793 + GFF4726 0.76 -0.8
89,793 + GFF4726 0.76 -0.6
89,793 + GFF4726 0.76 -0.2
89,793 + GFF4726 0.76 +0.2
89,793 + GFF4726 0.76 -1.1
89,793 + GFF4726 0.76 +0.4
89,794 - GFF4726 0.76 +0.4
89,794 - GFF4726 0.76 -0.0
89,794 - GFF4726 0.76 -0.4
89,794 - GFF4726 0.76 -2.3
89,794 - GFF4726 0.76 +0.4
89,794 - GFF4726 0.76 -0.9
89,794 - GFF4726 0.76 -0.7
89,796 + GFF4726 0.76 -0.1
89,796 + GFF4726 0.76 -0.4
89,796 + GFF4726 0.76 +1.1
89,797 - GFF4726 0.76 +0.0
89,797 - GFF4726 0.76 +0.2
89,797 - GFF4726 0.76 -1.8
89,797 - GFF4726 0.76 -1.9
89,797 - GFF4726 0.76 +0.5
89,799 + GFF4726 0.76 -1.3
89,799 + GFF4726 0.76 +0.6
89,799 + GFF4726 0.76 -0.3
89,800 - GFF4726 0.76 -0.1
89,808 + GFF4726 0.76 -0.6
89,808 + GFF4726 0.76 -0.1
89,808 + GFF4726 0.76 +0.8
89,809 - GFF4726 0.76 -1.9
89,836 - GFF4726 0.77 -1.1
89,836 - GFF4726 0.77 +0.7
89,872 - GFF4726 0.79 +0.9
89,874 + GFF4726 0.79 -0.4
89,874 + GFF4726 0.79 +0.6
89,874 + GFF4726 0.79 -0.2
89,875 - GFF4726 0.79 +1.0
89,875 - GFF4726 0.79 -1.2
89,875 - GFF4726 0.79 -0.9
89,982 + GFF4726 0.84 -1.8
89,982 + GFF4726 0.84 -0.2
89,982 + GFF4726 0.84 +2.0
89,983 - GFF4726 0.84 -0.0
89,983 - GFF4726 0.84 +0.0
90,198 + +1.0
90,199 - -0.9
90,199 - -0.1
90,199 - +0.8
90,445 + -0.9
90,445 + -0.2
90,446 - +0.8
90,544 + +0.4
90,545 - +0.8
90,601 + GFF4727 0.13 -0.2
90,602 - GFF4727 0.14 +0.5
90,850 + GFF4727 0.53 +1.2
90,901 + GFF4727 0.61 -0.6
90,901 + GFF4727 0.61 -0.1
90,901 + GFF4727 0.61 +0.3
90,902 - GFF4727 0.61 -0.4
90,902 - GFF4727 0.61 +0.9
90,902 - GFF4727 0.61 +0.0
90,902 - GFF4727 0.61 -0.1
90,902 - GFF4727 0.61 -0.4
90,916 + GFF4727 0.63 +0.1
91,249 - -0.6
91,664 + GFF4728 0.48 +0.1
91,758 + GFF4728 0.56 +0.5
91,850 + GFF4728 0.65 +1.2
91,850 + GFF4728 0.65 +0.3
91,851 - GFF4728 0.65 +0.6
91,851 - GFF4728 0.65 -0.6
92,010 + GFF4728 0.79 -0.2
92,011 - GFF4728 0.79 -0.5
92,034 + GFF4728 0.82 +1.1
92,034 + GFF4728 0.82 -0.0
92,035 - GFF4728 0.82 +0.1
92,035 - GFF4728 0.82 -0.1
92,037 + GFF4728 0.82 +0.0
92,037 + GFF4728 0.82 -0.6
92,038 - GFF4728 0.82 -1.9
92,122 - GFF4728 0.90 +2.2
92,122 - GFF4728 0.90 -1.1
92,148 + -0.2
92,148 + +0.2
92,148 + -1.0
92,148 + -0.1
92,148 + +0.1
92,148 + -0.2
92,148 + -0.2
92,148 + +0.8
92,148 + -0.4
92,148 + -0.0
92,149 - +0.5
92,149 - -1.4
92,149 - -0.3
92,149 - -0.6
92,149 - -0.2
92,149 - +1.1
92,149 - -0.8
92,149 - +2.0
92,149 - -2.0
92,149 - -2.4
92,149 - -0.3
92,149 - -2.9
92,149 - +0.4

Or see this region's nucleotide sequence