Strain Fitness in Variovorax sp. SCN45 around GFF4687

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
46,585	+				-0.0
46,585	+				-0.7
46,585	+				-1.0
46,585	+				+0.2
46,585	+				-1.6
46,585	+				+0.2
46,585	+				-0.2
46,586	-				-0.7
46,586	-				-1.4
46,586	-				+1.5
46,586	-				-0.2
46,586	-				+0.0
46,586	-				-1.0
46,586	-				+0.1
46,586	-				+0.1
46,586	-				-0.1
46,713	+				-0.0
46,713	+				-0.9
46,713	+				-0.5
46,713	+				+0.3
46,713	+				-0.3
46,713	+				+1.4
46,714	-				-0.0
46,714	-				+0.4
46,714	-				+1.1
46,714	-				-0.2
46,714	-				-0.0
47,073	+		GFF4686	0.57	+0.4
47,073	+		GFF4686	0.57	-0.9
47,074	-		GFF4686	0.57	-0.8
47,074	-		GFF4686	0.57	-0.8
47,074	-		GFF4686	0.57	-1.2
47,074	-		GFF4686	0.57	+0.2
47,074	-		GFF4686	0.57	+0.2
47,074	-		GFF4686	0.57	-0.6
47,165	+		GFF4686	0.71	-1.3
47,166	-		GFF4686	0.71	+0.3
47,166	-		GFF4686	0.71	-0.5
47,166	-		GFF4686	0.71	-0.2
47,229	+		GFF4686	0.80	+0.7
47,229	+		GFF4686	0.80	-0.9
47,230	-		GFF4686	0.80	-0.9
47,230	-		GFF4686	0.80	-0.2
47,230	-		GFF4686	0.80	+0.7
47,250	+		GFF4686	0.83	+0.4
47,251	-		GFF4686	0.83	-0.3
47,277	-		GFF4686	0.87	-0.5
47,277	-		GFF4686	0.87	+1.8
47,277	-		GFF4686	0.87	+0.7
47,277	-		GFF4686	0.87	+1.4
47,278	+		GFF4686	0.87	-0.3
47,278	+		GFF4686	0.87	-0.9
47,279	-		GFF4686	0.88	-0.3
47,289	+		GFF4686	0.89	-1.4
47,289	+		GFF4686	0.89	-0.8
47,290	-		GFF4686	0.89	-1.5
47,290	-		GFF4686	0.89	-0.9
47,290	-		GFF4686	0.89	-0.1
47,290	-		GFF4686	0.89	+0.8
47,290	-		GFF4686	0.89	-0.9
47,290	-		GFF4686	0.89	-0.7
47,290	-		GFF4686	0.89	-1.8
47,290	-		GFF4686	0.89	+0.0
47,320	-				-0.9
47,345	+				-0.4
47,373	+				+0.0
47,373	+				-0.1
47,399	+				-1.1
47,406	+				+1.0
47,406	+				-0.4
47,406	+				-0.2
47,406	+				-1.3
47,406	+				-0.5
47,407	-				-0.3
47,407	-				+0.4
47,409	+				-0.8
47,409	+				-2.2
47,410	-				+0.5
47,415	+				-0.4
47,415	+				-1.1
47,416	-				+0.0
47,416	-				-0.9
47,416	-				+0.2
47,446	+				-1.4
47,446	+				-0.3
47,446	+				-1.3
47,446	+				-2.3
47,446	+				+0.7
47,446	+				-1.0
47,446	+				+0.7
47,446	+				-0.2
47,447	-				-0.6
47,447	-				+0.4
47,447	-				+0.4
47,447	-				-0.4
47,447	-				-1.2
47,447	-				-0.1
47,447	-				+0.1
47,447	-				-0.2
47,447	-				+0.8
47,447	-				+1.2
47,447	-				+0.2
47,447	-				+0.9
47,507	+				+0.2
47,507	+				+0.5
47,507	+				-0.2
47,508	-				-1.6
47,508	-				-0.4
47,509	+				+0.9
47,509	+				-0.6
47,510	-				-0.2
47,510	-				-1.2
47,545	+				-1.1
47,545	+				-0.5
47,545	+				-0.1
47,545	+				-0.4
47,545	+				+0.2
47,546	-				-1.4
47,546	-				+0.4
47,546	-				-0.4
47,546	-				-0.5
47,594	+		GFF4687	0.19	-0.6
47,594	+		GFF4687	0.19	-0.8
47,594	+		GFF4687	0.19	-0.8
47,594	+		GFF4687	0.19	-1.1
47,594	+		GFF4687	0.19	-0.9
47,594	+		GFF4687	0.19	-0.8
47,595	-		GFF4687	0.19	-0.8
47,595	-		GFF4687	0.19	+0.4
47,595	-		GFF4687	0.19	-2.3
47,595	-		GFF4687	0.19	+0.3
47,754	-		GFF4687	0.62	-0.7
48,046	+				+1.9
48,046	+				-1.2
48,046	+				+0.4
48,046	+				-0.4
48,047	-				+0.2
48,047	-				+0.4
48,047	-				-0.6
48,047	-				-0.1
48,047	-				-0.9