Strain Fitness in Variovorax sp. SCN45 around GFF4594

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4593 and GFF4594 are separated by 153 nucleotidesGFF4594 and GFF4595 are separated by 175 nucleotides GFF4593 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 233,476 to 234,372 GFF4593 GFF4594 - Aspartate ammonia-lyase (EC 4.3.1.1), at 234,526 to 235,998 GFF4594 GFF4595 - Transcriptional regulator, at 236,174 to 237,160 GFF4595 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2 3at 233.535 kb on + strandat 233.535 kb on + strandat 233.535 kb on + strandat 233.535 kb on + strandat 233.536 kb on - strandat 233.603 kb on + strand, within GFF4593at 233.604 kb on - strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.008 kb on + strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.009 kb on - strand, within GFF4593at 234.017 kb on + strand, within GFF4593at 234.017 kb on + strand, within GFF4593at 234.017 kb on + strand, within GFF4593at 234.018 kb on - strand, within GFF4593at 234.018 kb on - strand, within GFF4593at 234.018 kb on - strand, within GFF4593at 234.131 kb on + strand, within GFF4593at 234.132 kb on - strand, within GFF4593at 234.132 kb on - strand, within GFF4593at 234.132 kb on - strand, within GFF4593at 234.132 kb on - strand, within GFF4593at 234.212 kb on + strand, within GFF4593at 234.212 kb on + strand, within GFF4593at 234.212 kb on + strand, within GFF4593at 234.212 kb on + strand, within GFF4593at 234.212 kb on + strand, within GFF4593at 234.212 kb on + strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.213 kb on - strand, within GFF4593at 234.233 kb on + strand, within GFF4593at 234.233 kb on + strand, within GFF4593at 234.233 kb on + strand, within GFF4593at 234.234 kb on - strand, within GFF4593at 234.234 kb on - strand, within GFF4593at 234.234 kb on - strand, within GFF4593at 234.234 kb on - strand, within GFF4593at 234.404 kb on - strandat 234.407 kb on + strandat 234.407 kb on + strandat 234.408 kb on - strandat 234.408 kb on - strandat 234.420 kb on + strandat 234.420 kb on + strandat 234.549 kb on + strandat 234.549 kb on + strandat 234.549 kb on + strandat 234.549 kb on + strandat 234.550 kb on - strandat 234.550 kb on - strandat 234.604 kb on + strandat 234.604 kb on + strandat 234.604 kb on + strandat 234.604 kb on + strandat 234.604 kb on + strandat 234.604 kb on + strandat 234.604 kb on + strandat 234.605 kb on - strandat 234.605 kb on - strandat 234.605 kb on - strandat 234.740 kb on + strand, within GFF4594at 235.248 kb on - strand, within GFF4594at 235.248 kb on - strand, within GFF4594at 235.248 kb on - strand, within GFF4594at 235.248 kb on - strand, within GFF4594at 235.268 kb on + strand, within GFF4594at 235.269 kb on - strand, within GFF4594at 235.269 kb on - strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.616 kb on + strand, within GFF4594at 235.841 kb on + strand, within GFF4594at 235.842 kb on - strand, within GFF4594at 235.842 kb on - strand, within GFF4594at 235.934 kb on + strandat 235.935 kb on - strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.088 kb on - strandat 236.088 kb on - strandat 236.088 kb on - strandat 236.145 kb on + strandat 236.202 kb on + strandat 236.203 kb on - strandat 236.316 kb on + strand, within GFF4595at 236.316 kb on + strand, within GFF4595at 236.317 kb on - strand, within GFF4595at 236.481 kb on + strand, within GFF4595at 236.481 kb on + strand, within GFF4595at 236.547 kb on + strand, within GFF4595at 236.548 kb on - strand, within GFF4595at 236.562 kb on + strand, within GFF4595at 236.562 kb on + strand, within GFF4595at 236.563 kb on - strand, within GFF4595at 236.571 kb on + strand, within GFF4595at 236.571 kb on + strand, within GFF4595at 236.572 kb on - strand, within GFF4595at 236.572 kb on - strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.680 kb on - strand, within GFF4595at 236.680 kb on - strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.722 kb on - strand, within GFF4595at 236.967 kb on + strand, within GFF4595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
233,535 + -0.6
233,535 + -0.2
233,535 + -0.2
233,535 + -2.0
233,536 - +1.0
233,603 + GFF4593 0.14 +0.2
233,604 - GFF4593 0.14 +0.6
234,008 + GFF4593 0.59 +0.2
234,008 + GFF4593 0.59 -0.8
234,008 + GFF4593 0.59 +0.3
234,008 + GFF4593 0.59 +1.3
234,008 + GFF4593 0.59 -1.2
234,008 + GFF4593 0.59 +2.0
234,008 + GFF4593 0.59 +0.4
234,008 + GFF4593 0.59 +1.0
234,008 + GFF4593 0.59 -0.0
234,008 + GFF4593 0.59 -1.6
234,008 + GFF4593 0.59 -0.5
234,008 + GFF4593 0.59 -0.1
234,008 + GFF4593 0.59 +0.4
234,009 - GFF4593 0.59 -0.8
234,009 - GFF4593 0.59 -0.2
234,009 - GFF4593 0.59 -0.8
234,009 - GFF4593 0.59 -1.0
234,009 - GFF4593 0.59 -0.4
234,009 - GFF4593 0.59 -0.9
234,009 - GFF4593 0.59 -0.9
234,009 - GFF4593 0.59 -0.6
234,009 - GFF4593 0.59 -1.2
234,009 - GFF4593 0.59 -0.1
234,009 - GFF4593 0.59 +0.0
234,017 + GFF4593 0.60 -0.7
234,017 + GFF4593 0.60 +1.0
234,017 + GFF4593 0.60 -0.5
234,018 - GFF4593 0.60 -0.3
234,018 - GFF4593 0.60 +0.4
234,018 - GFF4593 0.60 +0.4
234,131 + GFF4593 0.73 +0.2
234,132 - GFF4593 0.73 -0.8
234,132 - GFF4593 0.73 -0.9
234,132 - GFF4593 0.73 -1.4
234,132 - GFF4593 0.73 +0.0
234,212 + GFF4593 0.82 -0.2
234,212 + GFF4593 0.82 -0.4
234,212 + GFF4593 0.82 -1.7
234,212 + GFF4593 0.82 -0.5
234,212 + GFF4593 0.82 -0.7
234,212 + GFF4593 0.82 +2.8
234,213 - GFF4593 0.82 -0.3
234,213 - GFF4593 0.82 +0.2
234,213 - GFF4593 0.82 -0.1
234,213 - GFF4593 0.82 -1.9
234,213 - GFF4593 0.82 +0.6
234,213 - GFF4593 0.82 -1.3
234,213 - GFF4593 0.82 -0.5
234,213 - GFF4593 0.82 -0.6
234,213 - GFF4593 0.82 -0.0
234,233 + GFF4593 0.84 -0.3
234,233 + GFF4593 0.84 -1.8
234,233 + GFF4593 0.84 -0.0
234,234 - GFF4593 0.85 -0.3
234,234 - GFF4593 0.85 -0.2
234,234 - GFF4593 0.85 -0.5
234,234 - GFF4593 0.85 +0.2
234,404 - +0.0
234,407 + -0.7
234,407 + -0.8
234,408 - -1.4
234,408 - -0.2
234,420 + +0.5
234,420 + -1.0
234,549 + -0.1
234,549 + -1.2
234,549 + -0.2
234,549 + -0.2
234,550 - -2.5
234,550 - +0.4
234,604 + -1.4
234,604 + +0.6
234,604 + -0.1
234,604 + -0.2
234,604 + -1.1
234,604 + -0.2
234,604 + -0.2
234,605 - -0.1
234,605 - -1.4
234,605 - -0.2
234,740 + GFF4594 0.15 -0.7
235,248 - GFF4594 0.49 +0.3
235,248 - GFF4594 0.49 +0.6
235,248 - GFF4594 0.49 -0.5
235,248 - GFF4594 0.49 -0.2
235,268 + GFF4594 0.50 -0.3
235,269 - GFF4594 0.50 -0.7
235,269 - GFF4594 0.50 -0.2
235,382 + GFF4594 0.58 -1.0
235,382 + GFF4594 0.58 -1.1
235,382 + GFF4594 0.58 -0.7
235,382 + GFF4594 0.58 -0.5
235,382 + GFF4594 0.58 -0.0
235,382 + GFF4594 0.58 -2.0
235,382 + GFF4594 0.58 -1.1
235,382 + GFF4594 0.58 -0.4
235,382 + GFF4594 0.58 +0.2
235,382 + GFF4594 0.58 -1.1
235,382 + GFF4594 0.58 -0.8
235,383 - GFF4594 0.58 -1.5
235,383 - GFF4594 0.58 -0.2
235,383 - GFF4594 0.58 -1.0
235,383 - GFF4594 0.58 -0.3
235,383 - GFF4594 0.58 +0.0
235,383 - GFF4594 0.58 +1.0
235,383 - GFF4594 0.58 -1.0
235,383 - GFF4594 0.58 +0.2
235,559 + GFF4594 0.70 +0.0
235,559 + GFF4594 0.70 +0.1
235,559 + GFF4594 0.70 +0.3
235,559 + GFF4594 0.70 -0.3
235,560 - GFF4594 0.70 -0.0
235,560 - GFF4594 0.70 -0.8
235,560 - GFF4594 0.70 -0.8
235,560 - GFF4594 0.70 -0.1
235,616 + GFF4594 0.74 -0.8
235,841 + GFF4594 0.89 -0.4
235,842 - GFF4594 0.89 -0.1
235,842 - GFF4594 0.89 -0.1
235,934 + +1.5
235,935 - +0.6
235,998 + +0.0
235,998 + -1.7
235,998 + +0.8
235,998 + -0.0
235,998 + -0.4
235,999 - -1.4
235,999 - +0.5
235,999 - -1.4
235,999 - -0.1
235,999 - -0.4
235,999 - +0.0
235,999 - +2.8
235,999 - -0.5
235,999 - +0.9
236,087 + -0.3
236,087 + +0.1
236,087 + +0.3
236,087 + +0.0
236,087 + -2.6
236,087 + +0.5
236,087 + -0.3
236,087 + +1.1
236,087 + +0.6
236,087 + +0.3
236,088 - -0.8
236,088 - -0.5
236,088 - -0.1
236,145 + -0.4
236,202 + -0.0
236,203 - -0.4
236,316 + GFF4595 0.14 +0.8
236,316 + GFF4595 0.14 +0.2
236,317 - GFF4595 0.14 -0.5
236,481 + GFF4595 0.31 +0.1
236,481 + GFF4595 0.31 -0.8
236,547 + GFF4595 0.38 +1.0
236,548 - GFF4595 0.38 -0.8
236,562 + GFF4595 0.39 -0.2
236,562 + GFF4595 0.39 +1.2
236,563 - GFF4595 0.39 -0.8
236,571 + GFF4595 0.40 -0.5
236,571 + GFF4595 0.40 -0.2
236,572 - GFF4595 0.40 +0.5
236,572 - GFF4595 0.40 -0.5
236,679 + GFF4595 0.51 -0.6
236,679 + GFF4595 0.51 -0.0
236,679 + GFF4595 0.51 -0.1
236,679 + GFF4595 0.51 -0.4
236,679 + GFF4595 0.51 -0.3
236,680 - GFF4595 0.51 -0.2
236,680 - GFF4595 0.51 -0.2
236,721 + GFF4595 0.55 -0.0
236,721 + GFF4595 0.55 +0.1
236,721 + GFF4595 0.55 +0.8
236,722 - GFF4595 0.56 -0.9
236,967 + GFF4595 0.80 -1.2

Or see this region's nucleotide sequence