Strain Fitness in Variovorax sp. SCN45 around GFF448

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
485,367	+		GFF447	0.25	-0.3
485,367	+		GFF447	0.25	-0.8
485,367	+		GFF447	0.25	+0.6
485,368	-		GFF447	0.25	-0.4
485,368	-		GFF447	0.25	-0.7
485,368	-		GFF447	0.25	+0.8
485,368	-		GFF447	0.25	+0.5
485,497	-		GFF447	0.40	-2.0
485,497	-		GFF447	0.40	-0.5
486,464	+		GFF448	0.74	-1.0
486,464	+		GFF448	0.74	-1.7
486,464	+		GFF448	0.74	-0.1
486,465	-		GFF448	0.74	-0.7
486,465	-		GFF448	0.74	+0.2
486,465	-		GFF448	0.74	-0.0
486,465	-		GFF448	0.74	-1.6
486,465	-		GFF448	0.74	+1.3
486,606	+				+1.9
486,606	+				+0.1
486,607	-				-0.9
486,607	-				-0.7
486,607	-				+0.6
486,607	-				-1.7
486,607	-				+0.7
486,695	+				+1.0
486,699	+				-0.3
486,699	+				-0.6
486,699	+				-0.2
486,700	-				+1.3
486,700	-				-0.8
486,726	+				+0.1
486,726	+				-0.3
486,726	+				-1.3
486,726	+				-1.4
486,726	+				-0.7
486,726	+				-0.2
486,726	+				-2.0
486,727	-				-0.6
486,727	-				-0.1
486,727	-				-1.3
486,727	-				+1.9
486,727	-				-1.0
486,727	-				+0.4
486,819	+		GFF449	0.15	+0.2
486,819	+		GFF449	0.15	+0.2
486,820	-		GFF449	0.15	+0.1
486,820	-		GFF449	0.15	-0.3
486,820	-		GFF449	0.15	+0.9
486,820	-		GFF449	0.15	-0.6
487,210	-		GFF449	0.43	+2.3
487,585	-		GFF449	0.69	-0.2