Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4450 and GFF4451 are separated by 32 nucleotides GFF4451 and GFF4452 are separated by 6 nucleotides
GFF4450 - Rod shape-determining protein RodA, at 89,744 to 90,898
GFF4450
GFF4451 - Permease of the drug/metabolite transporter (DMT) superfamily, at 90,931 to 92,772
GFF4451
GFF4452 - Two-component transcriptional response regulator, LuxR family, at 92,779 to 93,537
GFF4452
Position (kb) 90
91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 91.043 kb on + strand at 91.043 kb on + strand at 91.044 kb on - strand at 91.044 kb on - strand at 91.156 kb on + strand, within GFF4451 at 91.156 kb on + strand, within GFF4451 at 91.231 kb on + strand, within GFF4451 at 91.272 kb on - strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.655 kb on + strand, within GFF4451 at 91.656 kb on - strand, within GFF4451 at 91.680 kb on - strand, within GFF4451 at 92.010 kb on - strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.121 kb on - strand, within GFF4451 at 92.121 kb on - strand, within GFF4451 at 92.121 kb on - strand, within GFF4451 at 92.249 kb on + strand, within GFF4451 at 92.249 kb on + strand, within GFF4451 at 92.249 kb on + strand, within GFF4451 at 92.250 kb on + strand, within GFF4451 at 92.250 kb on - strand, within GFF4451 at 92.250 kb on - strand, within GFF4451 at 92.250 kb on - strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.414 kb on + strand, within GFF4451 at 92.415 kb on - strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.603 kb on + strand at 92.603 kb on + strand at 92.603 kb on + strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.925 kb on - strand, within GFF4452 at 92.925 kb on - strand, within GFF4452 at 92.925 kb on - strand, within GFF4452 at 92.925 kb on - strand, within GFF4452 at 93.074 kb on + strand, within GFF4452 at 93.075 kb on - strand, within GFF4452 at 93.075 kb on - strand, within GFF4452 at 93.182 kb on + strand, within GFF4452 at 93.182 kb on + strand, within GFF4452 at 93.182 kb on + strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.519 kb on + strand at 93.520 kb on - strand at 93.537 kb on + strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.573 kb on - strand at 93.634 kb on + strand at 93.686 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.737 kb on + strand at 93.737 kb on + strand at 93.738 kb on - strand at 93.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 91,043 + -0.7 91,043 + -0.1 91,044 - +0.2 91,044 - -1.2 91,156 + GFF4451 0.12 -0.2 91,156 + GFF4451 0.12 +0.4 91,231 + GFF4451 0.16 +0.1 91,272 - GFF4451 0.19 -0.1 91,517 + GFF4451 0.32 -0.4 91,517 + GFF4451 0.32 -0.9 91,517 + GFF4451 0.32 -0.1 91,517 + GFF4451 0.32 -0.1 91,517 + GFF4451 0.32 -1.1 91,517 + GFF4451 0.32 -0.6 91,517 + GFF4451 0.32 -0.2 91,518 - GFF4451 0.32 -0.5 91,518 - GFF4451 0.32 -0.8 91,518 - GFF4451 0.32 -1.5 91,518 - GFF4451 0.32 +0.2 91,518 - GFF4451 0.32 -1.7 91,518 - GFF4451 0.32 -0.4 91,518 - GFF4451 0.32 -1.0 91,518 - GFF4451 0.32 +0.4 91,518 - GFF4451 0.32 +0.2 91,518 - GFF4451 0.32 -0.7 91,518 - GFF4451 0.32 -0.5 91,518 - GFF4451 0.32 +1.2 91,518 - GFF4451 0.32 +0.5 91,655 + GFF4451 0.39 -1.6 91,656 - GFF4451 0.39 -0.0 91,680 - GFF4451 0.41 -0.8 92,010 - GFF4451 0.59 -2.0 92,120 + GFF4451 0.65 -1.0 92,120 + GFF4451 0.65 +0.7 92,120 + GFF4451 0.65 +0.6 92,120 + GFF4451 0.65 -0.4 92,120 + GFF4451 0.65 -1.0 92,121 - GFF4451 0.65 -0.5 92,121 - GFF4451 0.65 -0.7 92,121 - GFF4451 0.65 -1.1 92,249 + GFF4451 0.72 -2.0 92,249 + GFF4451 0.72 +0.1 92,249 + GFF4451 0.72 -0.4 92,250 + GFF4451 0.72 -1.2 92,250 - GFF4451 0.72 -0.4 92,250 - GFF4451 0.72 -1.4 92,250 - GFF4451 0.72 -2.0 92,392 + GFF4451 0.79 -0.5 92,392 + GFF4451 0.79 +0.2 92,392 + GFF4451 0.79 +0.2 92,392 + GFF4451 0.79 -0.6 92,392 + GFF4451 0.79 +0.4 92,392 + GFF4451 0.79 +0.4 92,393 - GFF4451 0.79 +0.2 92,393 - GFF4451 0.79 -1.4 92,393 - GFF4451 0.79 +0.6 92,393 - GFF4451 0.79 -0.1 92,393 - GFF4451 0.79 -1.4 92,393 - GFF4451 0.79 -0.9 92,393 - GFF4451 0.79 +0.1 92,393 - GFF4451 0.79 -0.8 92,393 - GFF4451 0.79 +0.1 92,396 + GFF4451 0.80 +0.1 92,396 + GFF4451 0.80 +0.5 92,396 + GFF4451 0.80 +0.6 92,396 + GFF4451 0.80 +0.3 92,396 + GFF4451 0.80 -0.4 92,396 + GFF4451 0.80 -0.8 92,396 + GFF4451 0.80 -0.8 92,396 + GFF4451 0.80 +0.1 92,396 + GFF4451 0.80 -1.7 92,396 + GFF4451 0.80 -0.1 92,396 + GFF4451 0.80 +0.4 92,396 + GFF4451 0.80 +0.4 92,396 + GFF4451 0.80 -1.0 92,396 + GFF4451 0.80 +1.0 92,397 - GFF4451 0.80 +1.5 92,397 - GFF4451 0.80 -0.4 92,397 - GFF4451 0.80 +0.2 92,397 - GFF4451 0.80 -0.9 92,397 - GFF4451 0.80 -1.2 92,397 - GFF4451 0.80 -0.4 92,397 - GFF4451 0.80 +0.8 92,397 - GFF4451 0.80 +0.0 92,397 - GFF4451 0.80 -0.9 92,414 + GFF4451 0.81 -1.1 92,415 - GFF4451 0.81 -0.8 92,447 + GFF4451 0.82 -1.4 92,447 + GFF4451 0.82 +0.5 92,447 + GFF4451 0.82 -1.0 92,447 + GFF4451 0.82 +0.3 92,447 + GFF4451 0.82 +1.8 92,448 - GFF4451 0.82 +0.5 92,448 - GFF4451 0.82 +0.1 92,448 - GFF4451 0.82 +0.4 92,448 - GFF4451 0.82 -0.4 92,448 - GFF4451 0.82 -0.3 92,603 + -2.0 92,603 + -0.4 92,603 + +0.1 92,604 - -0.3 92,604 - +0.2 92,604 - -1.9 92,604 - -0.8 92,925 - GFF4452 0.19 -1.1 92,925 - GFF4452 0.19 -0.5 92,925 - GFF4452 0.19 -0.2 92,925 - GFF4452 0.19 -0.8 93,074 + GFF4452 0.39 +0.1 93,075 - GFF4452 0.39 -0.2 93,075 - GFF4452 0.39 -0.7 93,182 + GFF4452 0.53 -0.6 93,182 + GFF4452 0.53 -0.3 93,182 + GFF4452 0.53 -0.5 93,183 - GFF4452 0.53 -0.6 93,183 - GFF4452 0.53 -1.7 93,183 - GFF4452 0.53 -1.0 93,183 - GFF4452 0.53 +0.2 93,183 - GFF4452 0.53 -1.4 93,519 + +0.4 93,520 - +0.3 93,537 + -0.0 93,538 - -0.3 93,538 - +0.1 93,538 - -0.5 93,538 - -0.1 93,538 - -1.3 93,538 - +0.2 93,573 - +0.2 93,634 + -1.5 93,686 + -2.1 93,697 + -0.2 93,697 + -0.2 93,697 + -1.2 93,697 + -0.7 93,697 + -1.2 93,698 - +0.2 93,698 - -0.0 93,698 - -0.3 93,698 - -1.5 93,732 + +0.3 93,732 + -0.3 93,732 + +3.8 93,732 + +1.0 93,733 - -0.3 93,733 - -1.0 93,733 - -0.0 93,733 - -1.4 93,733 - +0.5 93,733 - -0.6 93,737 + -0.2 93,737 + -0.2 93,738 - -0.8 93,738 - +0.6
Or see this region's nucleotide sequence