Strain Fitness in Variovorax sp. SCN45 around GFF3961

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
160,552	-				-0.5
160,558	+				+0.3
160,558	+				+0.0
160,558	+				+1.7
160,558	+				-0.9
160,558	+				-0.3
160,558	+				+0.5
160,558	+				+0.3
160,558	+				-0.2
160,558	+				-2.6
160,558	+				-1.8
160,559	-				+1.0
160,559	-				-0.3
160,559	-				-0.3
160,559	-				-2.0
160,559	-				-0.4
160,559	-				-0.2
160,559	-				+1.0
160,559	-				-0.1
160,559	-				-0.3
160,584	-				+0.3
160,584	-				-0.2
160,584	-				-0.9
160,949	+		GFF3960	0.55	-1.2
160,949	+		GFF3960	0.55	+0.8
160,949	+		GFF3960	0.55	-2.0
160,949	+		GFF3960	0.55	+1.0
160,949	+		GFF3960	0.55	-1.3
160,950	-		GFF3960	0.55	-0.7
160,950	-		GFF3960	0.55	-0.5
160,950	-		GFF3960	0.55	-2.2
160,950	-		GFF3960	0.55	+0.1
160,950	-		GFF3960	0.55	-0.5
161,018	+		GFF3960	0.67	-0.5
161,018	+		GFF3960	0.67	-0.2
161,018	+		GFF3960	0.67	-1.3
161,018	+		GFF3960	0.67	-0.2
161,018	+		GFF3960	0.67	+1.2
161,018	+		GFF3960	0.67	+0.1
161,019	-		GFF3960	0.67	-0.3
161,019	-		GFF3960	0.67	-0.1
161,019	-		GFF3960	0.67	-1.3
161,019	-		GFF3960	0.67	+1.7
161,019	-		GFF3960	0.67	+0.5
161,019	-		GFF3960	0.67	+0.2
161,019	-		GFF3960	0.67	-0.3
161,019	-		GFF3960	0.67	+0.5
161,019	-		GFF3960	0.67	-0.2
161,019	-		GFF3960	0.67	-0.2
161,039	+		GFF3960	0.70	-1.9
161,039	+		GFF3960	0.70	-0.2
161,039	+		GFF3960	0.70	+0.1
161,039	+		GFF3960	0.70	+0.2
161,039	+		GFF3960	0.70	-0.2
161,108	+		GFF3960	0.82	+0.8
161,108	+		GFF3960	0.82	-1.1
161,108	+		GFF3960	0.82	+0.3
161,108	+		GFF3960	0.82	-1.7
161,108	+		GFF3960	0.82	-0.4
161,108	+		GFF3960	0.82	-1.2
161,109	-		GFF3960	0.82	-1.5
161,223	+				+1.7
161,312	+				+0.7
161,312	+				+1.5
161,410	+				-0.3
161,410	+				-1.8
161,410	+				-1.2
163,045	+		GFF3961	0.84	+0.4
163,045	+		GFF3961	0.84	+1.7
163,045	+		GFF3961	0.84	-0.3
163,045	+		GFF3961	0.84	-0.0
163,045	+		GFF3961	0.84	+1.5
163,045	+		GFF3961	0.84	+1.2
163,045	+		GFF3961	0.84	+0.3
163,045	+		GFF3961	0.84	+0.4
163,045	+		GFF3961	0.84	+0.5
163,045	+		GFF3961	0.84	+0.4
163,045	+		GFF3961	0.84	-0.4
163,046	-		GFF3961	0.84	-1.3
163,046	-		GFF3961	0.84	+0.1
163,046	-		GFF3961	0.84	+0.5
163,046	-		GFF3961	0.84	+0.1
163,046	-		GFF3961	0.84	-0.3
163,046	-		GFF3961	0.84	-0.6
163,098	+		GFF3961	0.87	-1.9
163,490	-				-0.2
163,597	+				+0.1
163,598	-				+1.0
163,598	-				-0.1
163,844	+		GFF3962	0.26	+1.3
163,844	+		GFF3962	0.26	+0.5
163,845	-		GFF3962	0.26	+0.0
163,845	-		GFF3962	0.26	-1.8
163,845	-		GFF3962	0.26	-0.5
163,891	+		GFF3962	0.31	-0.8
163,891	+		GFF3962	0.31	+0.2
163,891	+		GFF3962	0.31	+0.7
163,891	+		GFF3962	0.31	-0.0
163,892	-		GFF3962	0.31	+1.0
163,892	-		GFF3962	0.31	-0.1
163,892	-		GFF3962	0.31	-0.2
163,892	-		GFF3962	0.31	-0.5
163,892	-		GFF3962	0.31	-0.5
163,966	+		GFF3962	0.38	-0.3
163,966	+		GFF3962	0.38	-0.9
163,967	-		GFF3962	0.38	+0.3
164,039	-		GFF3962	0.45	+0.9
164,086	+		GFF3962	0.49	-0.1
164,087	-		GFF3962	0.49	+0.9
164,087	-		GFF3962	0.49	-0.1
164,311	+		GFF3962	0.70	-0.5
164,312	-		GFF3962	0.70	-0.2
164,329	+		GFF3962	0.72	+0.9
164,329	+		GFF3962	0.72	-0.2
164,329	+		GFF3962	0.72	+2.9
164,329	+		GFF3962	0.72	-0.3
164,330	-		GFF3962	0.72	-0.2
164,330	-		GFF3962	0.72	-1.5
164,330	-		GFF3962	0.72	-0.6
164,330	-		GFF3962	0.72	+2.1