Strain Fitness in Variovorax sp. SCN45 around GFF3600

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
112,346	+		GFF3598	0.72	+0.2
112,347	-		GFF3598	0.72	+0.3
112,490	+		GFF3598	0.85	-2.2
112,491	-		GFF3598	0.85	-0.3
112,491	-		GFF3598	0.85	-0.4
112,503	-		GFF3598	0.86	-0.4
112,583	+				+0.4
112,711	+				-0.6
112,711	+				-0.3
112,712	-				-0.1
112,712	-				+0.1
112,712	-				-0.5
112,712	-				+0.6
112,858	+				-0.1
112,858	+				-0.4
112,859	-				-0.7
112,859	-				-0.1
112,859	-				+0.1
112,960	+		GFF3599	0.31	-1.0
112,961	-		GFF3599	0.32	-0.1
112,961	-		GFF3599	0.32	+0.7
113,140	+		GFF3599	0.75	+0.4
113,140	+		GFF3599	0.75	+0.2
113,140	+		GFF3599	0.75	-0.5
113,140	+		GFF3599	0.75	+0.4
113,140	+		GFF3599	0.75	-0.1
113,140	+		GFF3599	0.75	-0.0
113,140	+		GFF3599	0.75	+0.2
113,140	+		GFF3599	0.75	-0.1
113,140	+		GFF3599	0.75	+0.5
113,140	+		GFF3599	0.75	+1.3
113,140	+		GFF3599	0.75	-0.7
113,140	+		GFF3599	0.75	+0.4
113,140	+		GFF3599	0.75	+2.1
113,140	+		GFF3599	0.75	-0.1
113,140	+		GFF3599	0.75	+1.4
113,140	+		GFF3599	0.75	+0.6
113,141	-		GFF3599	0.75	+0.8
113,141	-		GFF3599	0.75	-0.4
113,141	-		GFF3599	0.75	+0.8
113,141	-		GFF3599	0.75	-0.2
113,141	-		GFF3599	0.75	+1.0
113,141	-		GFF3599	0.75	+1.5
113,141	-		GFF3599	0.75	-0.6
113,141	-		GFF3599	0.75	+3.1
113,141	-		GFF3599	0.75	-0.0
113,141	-		GFF3599	0.75	-0.4
113,141	-		GFF3599	0.75	-0.3
113,141	-		GFF3599	0.75	-0.2
113,141	-		GFF3599	0.75	+0.3
113,141	-		GFF3599	0.75	-0.3
113,141	-		GFF3599	0.75	+0.9
113,322	-				-0.7
113,368	-				-0.9
113,390	-				+0.3
113,926	+		GFF3600	0.76	+0.3
113,926	+		GFF3600	0.76	-1.1
113,926	+		GFF3600	0.76	-1.5
113,926	+		GFF3600	0.76	-1.2
113,926	+		GFF3600	0.76	-2.4
113,926	+		GFF3600	0.76	-0.1
113,926	+		GFF3600	0.76	+0.9
113,927	-		GFF3600	0.76	+0.9
113,927	-		GFF3600	0.76	-1.5
113,998	+		GFF3600	0.85	-2.0
113,998	+		GFF3600	0.85	-0.1
113,998	+		GFF3600	0.85	-0.1
113,999	-		GFF3600	0.86	-0.1
114,112	+				+0.1
114,113	-				-0.1
114,259	+				-0.1
114,259	+				+1.0
114,259	+				+0.9
114,259	+				-1.9
114,259	+				-0.0
114,259	+				-0.5
114,259	+				+1.6
114,259	+				-0.2
114,260	-				-0.1
114,260	-				+1.2
114,260	-				-0.6
114,260	-				-0.7
114,260	-				-1.1
114,260	-				-0.6
114,260	-				-1.5
114,260	-				-0.3
114,260	-				-0.6
114,260	-				-0.2
114,292	+		GFF3601	0.12	-1.9
114,292	+		GFF3601	0.12	+0.3
114,292	+		GFF3601	0.12	-0.5
114,292	+		GFF3601	0.12	+0.0
114,292	+		GFF3601	0.12	-0.4
114,292	+		GFF3601	0.12	+0.4
114,293	-		GFF3601	0.12	-1.7
114,293	-		GFF3601	0.12	+1.1
114,293	-		GFF3601	0.12	+0.5
114,293	-		GFF3601	0.12	-0.7
114,667	+		GFF3601	0.40	+2.3
114,667	+		GFF3601	0.40	-0.7
114,668	-		GFF3601	0.40	+1.9
114,668	-		GFF3601	0.40	+0.1
114,668	-		GFF3601	0.40	+0.0
114,668	-		GFF3601	0.40	+0.6
114,721	+		GFF3601	0.44	+0.1
114,721	+		GFF3601	0.44	-1.7
114,722	-		GFF3601	0.44	-1.3
114,742	+		GFF3601	0.45	+0.4
114,781	+		GFF3601	0.48	+0.8
114,781	+		GFF3601	0.48	-0.0
114,781	+		GFF3601	0.48	-0.6
114,782	-		GFF3601	0.48	-0.5
114,811	+		GFF3601	0.51	+0.3
114,811	+		GFF3601	0.51	+0.3
114,811	+		GFF3601	0.51	-1.2
114,811	+		GFF3601	0.51	+0.6
114,812	-		GFF3601	0.51	-0.5
114,812	-		GFF3601	0.51	+1.7
114,812	-		GFF3601	0.51	+0.6
114,812	-		GFF3601	0.51	+0.9
114,812	-		GFF3601	0.51	-0.4
114,812	-		GFF3601	0.51	-0.6
114,823	+		GFF3601	0.52	+0.0
114,823	+		GFF3601	0.52	-0.1
114,823	+		GFF3601	0.52	+0.1
114,824	-		GFF3601	0.52	-0.5
114,824	-		GFF3601	0.52	+0.4
114,824	-		GFF3601	0.52	-0.3
114,874	+		GFF3601	0.55	-0.7
114,875	-		GFF3601	0.55	+0.0
114,901	+		GFF3601	0.57	+0.3
114,901	+		GFF3601	0.57	+0.3
114,901	+		GFF3601	0.57	+0.1
114,901	+		GFF3601	0.57	+0.7
114,901	+		GFF3601	0.57	-0.1
114,901	+		GFF3601	0.57	-0.1
114,901	+		GFF3601	0.57	-1.3
114,901	+		GFF3601	0.57	+0.0
114,901	+		GFF3601	0.57	-0.9
114,901	+		GFF3601	0.57	+0.4
114,902	-		GFF3601	0.57	+0.6
114,902	-		GFF3601	0.57	-0.7
114,902	-		GFF3601	0.57	+0.3
114,902	-		GFF3601	0.57	-0.3
114,902	-		GFF3601	0.57	-1.2
114,902	-		GFF3601	0.57	-0.3
114,902	-		GFF3601	0.57	-0.5
114,902	-		GFF3601	0.57	-0.5
114,902	-		GFF3601	0.57	-0.8
114,902	-		GFF3601	0.57	-0.4
114,902	-		GFF3601	0.57	-1.3
114,902	-		GFF3601	0.57	-0.8
114,902	-		GFF3601	0.57	+1.1
115,027	+		GFF3601	0.67	-1.0
115,027	+		GFF3601	0.67	-0.1
115,028	-		GFF3601	0.67	-0.2
115,028	-		GFF3601	0.67	-0.8
115,078	+		GFF3601	0.71	-0.7
115,078	+		GFF3601	0.71	-1.6
115,078	+		GFF3601	0.71	-0.3
115,078	+		GFF3601	0.71	-0.4
115,078	+		GFF3601	0.71	+0.0
115,079	-		GFF3601	0.71	-0.7
115,079	-		GFF3601	0.71	-0.1
115,079	-		GFF3601	0.71	-1.1