Strain Fitness in Variovorax sp. SCN45 around GFF3548

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3546 and GFF3548 overlap by 1 nucleotidesGFF3548 and GFF3549 are separated by 52 nucleotides GFF3546 - Chaperone protein HtpG, at 51,686 to 53,722 GFF3546 GFF3548 - hypothetical protein, at 53,722 to 54,333 GFF3548 GFF3549 - FIG01127675: hypothetical protein, at 54,386 to 55,738 GFF3549 Position (kb) 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 52.973 kb on + strand, within GFF3546at 52.973 kb on + strand, within GFF3546at 52.973 kb on + strand, within GFF3546at 52.973 kb on + strand, within GFF3546at 52.973 kb on + strand, within GFF3546at 52.974 kb on - strand, within GFF3546at 52.974 kb on - strand, within GFF3546at 52.974 kb on - strand, within GFF3546at 52.985 kb on + strand, within GFF3546at 52.985 kb on + strand, within GFF3546at 52.985 kb on + strand, within GFF3546at 52.986 kb on - strand, within GFF3546at 52.986 kb on - strand, within GFF3546at 53.067 kb on - strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.111 kb on + strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.112 kb on - strand, within GFF3546at 53.147 kb on + strand, within GFF3546at 53.147 kb on + strand, within GFF3546at 53.147 kb on + strand, within GFF3546at 53.147 kb on + strand, within GFF3546at 53.147 kb on + strand, within GFF3546at 53.147 kb on + strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.148 kb on - strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.150 kb on + strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.151 kb on - strand, within GFF3546at 53.267 kb on + strand, within GFF3546at 53.267 kb on + strand, within GFF3546at 53.267 kb on + strand, within GFF3546at 53.267 kb on + strand, within GFF3546at 53.267 kb on + strand, within GFF3546at 53.268 kb on - strand, within GFF3546at 53.268 kb on - strand, within GFF3546at 53.268 kb on - strand, within GFF3546at 53.268 kb on - strand, within GFF3546at 53.268 kb on - strand, within GFF3546at 53.690 kb on + strandat 53.690 kb on + strandat 53.690 kb on + strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.806 kb on + strand, within GFF3548at 53.807 kb on - strand, within GFF3548at 53.807 kb on - strand, within GFF3548at 53.807 kb on - strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.014 kb on - strand, within GFF3548at 54.014 kb on - strand, within GFF3548at 54.014 kb on - strand, within GFF3548at 54.096 kb on + strand, within GFF3548at 54.115 kb on + strand, within GFF3548at 54.115 kb on + strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.256 kb on + strand, within GFF3548at 54.256 kb on + strand, within GFF3548at 54.256 kb on + strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.540 kb on - strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.266 kb on - strand, within GFF3549

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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52,973 + GFF3546 0.63 +0.2
52,973 + GFF3546 0.63 +0.1
52,973 + GFF3546 0.63 -0.4
52,973 + GFF3546 0.63 +0.9
52,973 + GFF3546 0.63 +0.8
52,974 - GFF3546 0.63 -1.7
52,974 - GFF3546 0.63 +0.3
52,974 - GFF3546 0.63 -0.1
52,985 + GFF3546 0.64 +1.3
52,985 + GFF3546 0.64 -0.2
52,985 + GFF3546 0.64 +1.8
52,986 - GFF3546 0.64 -0.1
52,986 - GFF3546 0.64 -0.2
53,067 - GFF3546 0.68 +1.5
53,111 + GFF3546 0.70 -0.3
53,111 + GFF3546 0.70 -1.2
53,111 + GFF3546 0.70 -1.1
53,111 + GFF3546 0.70 -0.1
53,111 + GFF3546 0.70 -0.4
53,111 + GFF3546 0.70 -3.1
53,111 + GFF3546 0.70 +0.6
53,111 + GFF3546 0.70 +0.2
53,111 + GFF3546 0.70 -0.7
53,112 - GFF3546 0.70 -0.5
53,112 - GFF3546 0.70 -0.9
53,112 - GFF3546 0.70 -0.3
53,112 - GFF3546 0.70 -0.6
53,112 - GFF3546 0.70 -0.6
53,112 - GFF3546 0.70 -0.3
53,112 - GFF3546 0.70 +0.5
53,112 - GFF3546 0.70 +0.3
53,147 + GFF3546 0.72 +0.1
53,147 + GFF3546 0.72 +0.3
53,147 + GFF3546 0.72 -2.3
53,147 + GFF3546 0.72 -0.8
53,147 + GFF3546 0.72 -1.9
53,147 + GFF3546 0.72 +0.3
53,148 - GFF3546 0.72 +0.0
53,148 - GFF3546 0.72 -0.6
53,148 - GFF3546 0.72 +0.4
53,148 - GFF3546 0.72 -0.6
53,148 - GFF3546 0.72 +0.9
53,148 - GFF3546 0.72 -0.6
53,148 - GFF3546 0.72 +0.3
53,148 - GFF3546 0.72 -1.8
53,148 - GFF3546 0.72 -0.7
53,148 - GFF3546 0.72 +0.3
53,148 - GFF3546 0.72 -0.1
53,148 - GFF3546 0.72 -0.6
53,150 + GFF3546 0.72 +0.1
53,150 + GFF3546 0.72 -0.7
53,150 + GFF3546 0.72 -0.8
53,150 + GFF3546 0.72 +0.9
53,150 + GFF3546 0.72 +0.2
53,150 + GFF3546 0.72 +0.4
53,150 + GFF3546 0.72 +1.1
53,150 + GFF3546 0.72 +0.0
53,150 + GFF3546 0.72 -1.1
53,150 + GFF3546 0.72 -2.2
53,150 + GFF3546 0.72 +0.4
53,150 + GFF3546 0.72 -0.1
53,150 + GFF3546 0.72 -0.1
53,150 + GFF3546 0.72 -0.1
53,151 - GFF3546 0.72 +1.5
53,151 - GFF3546 0.72 -1.2
53,151 - GFF3546 0.72 -0.3
53,151 - GFF3546 0.72 -0.5
53,151 - GFF3546 0.72 +0.9
53,151 - GFF3546 0.72 +1.2
53,151 - GFF3546 0.72 -0.1
53,151 - GFF3546 0.72 +0.9
53,267 + GFF3546 0.78 -1.3
53,267 + GFF3546 0.78 -0.4
53,267 + GFF3546 0.78 -0.8
53,267 + GFF3546 0.78 -0.2
53,267 + GFF3546 0.78 +0.5
53,268 - GFF3546 0.78 -0.3
53,268 - GFF3546 0.78 -0.7
53,268 - GFF3546 0.78 +0.4
53,268 - GFF3546 0.78 -1.0
53,268 - GFF3546 0.78 -0.4
53,690 + -1.1
53,690 + -0.7
53,690 + +0.3
53,691 - -1.1
53,691 - -1.1
53,691 - -0.1
53,691 - -0.5
53,691 - +0.3
53,806 + GFF3548 0.14 +0.7
53,807 - GFF3548 0.14 -0.6
53,807 - GFF3548 0.14 -0.1
53,807 - GFF3548 0.14 -0.4
54,013 + GFF3548 0.48 +0.1
54,013 + GFF3548 0.48 -0.2
54,013 + GFF3548 0.48 -0.1
54,013 + GFF3548 0.48 +1.7
54,013 + GFF3548 0.48 -0.1
54,013 + GFF3548 0.48 +0.3
54,013 + GFF3548 0.48 +0.9
54,013 + GFF3548 0.48 +0.6
54,014 - GFF3548 0.48 -0.9
54,014 - GFF3548 0.48 -0.9
54,014 - GFF3548 0.48 -0.1
54,096 + GFF3548 0.61 -0.8
54,115 + GFF3548 0.64 +0.2
54,115 + GFF3548 0.64 -0.9
54,116 - GFF3548 0.64 +0.9
54,116 - GFF3548 0.64 -1.8
54,116 - GFF3548 0.64 -0.6
54,116 - GFF3548 0.64 -0.0
54,256 + GFF3548 0.87 +0.5
54,256 + GFF3548 0.87 +1.2
54,256 + GFF3548 0.87 -0.2
54,257 - GFF3548 0.87 -1.5
54,257 - GFF3548 0.87 +0.7
54,257 - GFF3548 0.87 -0.6
54,257 - GFF3548 0.87 +1.3
54,257 - GFF3548 0.87 +0.1
54,257 - GFF3548 0.87 -0.1
54,540 - GFF3549 0.11 +0.9
55,218 + GFF3549 0.61 +0.0
55,218 + GFF3549 0.61 +0.1
55,218 + GFF3549 0.61 -0.4
55,218 + GFF3549 0.61 -0.2
55,218 + GFF3549 0.61 +0.3
55,218 + GFF3549 0.61 -0.7
55,218 + GFF3549 0.61 +0.2
55,218 + GFF3549 0.61 +0.3
55,218 + GFF3549 0.61 +0.0
55,218 + GFF3549 0.61 -0.0
55,218 + GFF3549 0.61 +0.1
55,218 + GFF3549 0.61 -0.9
55,218 + GFF3549 0.61 -0.0
55,218 + GFF3549 0.61 -1.1
55,218 + GFF3549 0.61 -1.5
55,218 + GFF3549 0.61 +0.5
55,218 + GFF3549 0.61 -0.6
55,218 + GFF3549 0.61 -0.4
55,218 + GFF3549 0.61 +0.6
55,218 + GFF3549 0.61 -1.1
55,218 + GFF3549 0.61 +1.5
55,218 + GFF3549 0.61 +1.9
55,218 + GFF3549 0.61 +0.5
55,218 + GFF3549 0.61 +0.3
55,218 + GFF3549 0.61 +0.3
55,218 + GFF3549 0.61 -0.5
55,219 - GFF3549 0.62 -0.1
55,219 - GFF3549 0.62 -0.2
55,219 - GFF3549 0.62 -2.5
55,219 - GFF3549 0.62 +0.1
55,219 - GFF3549 0.62 +0.3
55,219 - GFF3549 0.62 -1.8
55,219 - GFF3549 0.62 +0.9
55,219 - GFF3549 0.62 +0.9
55,219 - GFF3549 0.62 -0.4
55,219 - GFF3549 0.62 -0.6
55,219 - GFF3549 0.62 +0.4
55,219 - GFF3549 0.62 -0.2
55,219 - GFF3549 0.62 -0.2
55,219 - GFF3549 0.62 -0.5
55,219 - GFF3549 0.62 -1.4
55,219 - GFF3549 0.62 +1.1
55,219 - GFF3549 0.62 +0.3
55,219 - GFF3549 0.62 -0.5
55,219 - GFF3549 0.62 -0.7
55,219 - GFF3549 0.62 -0.8
55,219 - GFF3549 0.62 -1.2
55,219 - GFF3549 0.62 -0.1
55,219 - GFF3549 0.62 -1.2
55,219 - GFF3549 0.62 -0.8
55,219 - GFF3549 0.62 +0.2
55,219 - GFF3549 0.62 +0.5
55,219 - GFF3549 0.62 -0.6
55,219 - GFF3549 0.62 -0.9
55,219 - GFF3549 0.62 -0.0
55,219 - GFF3549 0.62 +3.1
55,219 - GFF3549 0.62 +0.7
55,219 - GFF3549 0.62 -0.2
55,219 - GFF3549 0.62 +0.9
55,219 - GFF3549 0.62 -0.4
55,266 - GFF3549 0.65 -0.1

Or see this region's nucleotide sequence