Strain Fitness in Variovorax sp. SCN45 around GFF3507

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
9,516	+		GFF3505	0.17	-1.4
9,516	+		GFF3505	0.17	+0.1
9,517	-		GFF3505	0.18	-1.2
9,517	-		GFF3505	0.18	+0.3
9,517	-		GFF3505	0.18	-0.1
9,603	+		GFF3505	0.40	-0.3
9,603	+		GFF3505	0.40	-0.3
9,603	+		GFF3505	0.40	+0.1
9,717	+		GFF3505	0.71	-0.5
9,717	+		GFF3505	0.71	-0.3
9,717	+		GFF3505	0.71	+1.0
9,717	+		GFF3505	0.71	+0.9
9,717	+		GFF3505	0.71	-2.2
9,718	-		GFF3505	0.71	-0.4
9,939	-		GFF3506	0.16	+0.3
9,939	-		GFF3506	0.16	-0.5
9,939	-		GFF3506	0.16	-0.0
9,939	-		GFF3506	0.16	-1.1
9,939	-		GFF3506	0.16	-0.6
9,939	-		GFF3506	0.16	+0.4
10,119	-		GFF3506	0.47	+1.5
10,119	-		GFF3506	0.47	+0.1
10,119	-		GFF3506	0.47	-0.1
10,119	-		GFF3506	0.47	+0.0
10,236	-		GFF3506	0.67	-0.0
10,236	-		GFF3506	0.67	+0.5
10,236	-		GFF3506	0.67	+0.1
10,236	-		GFF3506	0.67	+0.1
10,236	-		GFF3506	0.67	-1.6
10,236	-		GFF3506	0.67	-0.7
10,236	-		GFF3506	0.67	+0.2
10,325	+		GFF3506	0.82	-0.6
10,352	+		GFF3506	0.87	-0.1
10,352	+		GFF3506	0.87	-0.7
10,352	+		GFF3506	0.87	-0.2
10,352	+		GFF3506	0.87	-0.4
10,400	+				-1.3
10,401	-				+1.1
10,435	+				-0.5
10,436	-				-0.1
10,436	-				+0.3
10,658	+		GFF3507	0.27	+1.3
10,716	+		GFF3507	0.35	+1.1
10,716	+		GFF3507	0.35	+1.0
10,716	+		GFF3507	0.35	+0.7
10,716	+		GFF3507	0.35	+1.4
10,717	-		GFF3507	0.36	+1.1
10,717	-		GFF3507	0.36	+0.1
10,717	-		GFF3507	0.36	+1.5
10,794	+		GFF3507	0.47	+0.5
10,794	+		GFF3507	0.47	+1.4
10,794	+		GFF3507	0.47	+0.2
10,794	+		GFF3507	0.47	+0.2
10,794	+		GFF3507	0.47	-0.1
10,794	+		GFF3507	0.47	+1.4
10,794	+		GFF3507	0.47	+1.3
10,795	-		GFF3507	0.47	+2.2
10,795	-		GFF3507	0.47	+0.8
10,795	-		GFF3507	0.47	+0.3
10,795	-		GFF3507	0.47	+0.4
10,795	-		GFF3507	0.47	+0.9
10,795	-		GFF3507	0.47	+0.3
11,282	+				-0.7
11,282	+				-0.7
11,283	-				-0.2
11,283	-				-0.2
11,283	-				-0.3
11,283	-				-0.8
11,357	+		GFF3508	0.11	-0.6
11,358	-		GFF3508	0.11	-0.2
11,504	-		GFF3508	0.21	-0.7
11,516	+		GFF3508	0.22	+0.1
11,516	+		GFF3508	0.22	+0.2
11,516	+		GFF3508	0.22	-0.6
11,699	+		GFF3508	0.35	-1.3
11,700	-		GFF3508	0.35	-1.1
11,700	-		GFF3508	0.35	-0.2
11,897	+		GFF3508	0.49	+0.8
12,095	+		GFF3508	0.62	-0.5
12,095	+		GFF3508	0.62	-0.2
12,096	-		GFF3508	0.62	+0.6
12,098	+		GFF3508	0.63	+0.1
12,098	+		GFF3508	0.63	-0.1
12,098	+		GFF3508	0.63	-0.0
12,098	+		GFF3508	0.63	+0.7
12,098	+		GFF3508	0.63	-0.6
12,099	-		GFF3508	0.63	+0.4
12,099	-		GFF3508	0.63	-0.2
12,099	-		GFF3508	0.63	-0.0