Strain Fitness in Variovorax sp. SCN45 around GFF3404

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3403 and GFF3404 are separated by 151 nucleotidesGFF3404 and GFF3405 are separated by 33 nucleotides GFF3403 - Benzoate catabolism regulator with shikimate kinase domain, at 225,710 to 226,654 GFF3403 GFF3404 - Benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44), at 226,806 to 228,482 GFF3404 GFF3405 - Benzoyl-CoA oxygenase component B, at 228,516 to 229,943 GFF3405 Position (kb) 226 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 225.917 kb on + strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 226.280 kb on + strand, within GFF3403at 226.280 kb on + strand, within GFF3403at 226.280 kb on + strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.281 kb on - strand, within GFF3403at 226.296 kb on - strand, within GFF3403at 226.304 kb on + strand, within GFF3403at 226.304 kb on + strand, within GFF3403at 226.304 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.340 kb on + strand, within GFF3403at 226.341 kb on - strand, within GFF3403at 226.341 kb on - strand, within GFF3403at 226.341 kb on - strand, within GFF3403at 226.553 kb on + strand, within GFF3403at 226.553 kb on + strand, within GFF3403at 226.553 kb on + strand, within GFF3403at 226.553 kb on + strand, within GFF3403at 226.553 kb on + strand, within GFF3403at 226.554 kb on - strand, within GFF3403at 226.554 kb on - strand, within GFF3403at 226.652 kb on + strandat 226.848 kb on + strandat 226.849 kb on - strandat 226.870 kb on - strandat 226.953 kb on + strandat 226.974 kb on + strand, within GFF3404at 226.974 kb on + strand, within GFF3404at 226.974 kb on + strand, within GFF3404at 226.974 kb on + strand, within GFF3404at 226.974 kb on + strand, within GFF3404at 226.974 kb on + strand, within GFF3404at 226.975 kb on - strand, within GFF3404at 226.975 kb on - strand, within GFF3404at 226.975 kb on - strand, within GFF3404at 226.975 kb on - strand, within GFF3404at 226.975 kb on - strand, within GFF3404at 227.245 kb on - strand, within GFF3404at 227.604 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.132 kb on + strand, within GFF3404at 228.132 kb on + strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.345 kb on - strandat 228.438 kb on + strandat 228.438 kb on + strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.532 kb on - strandat 228.532 kb on - strandat 228.532 kb on - strandat 228.532 kb on - strandat 228.666 kb on + strand, within GFF3405at 228.666 kb on + strand, within GFF3405at 228.666 kb on + strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.735 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.381 kb on - strand, within GFF3405at 229.395 kb on + strand, within GFF3405at 229.395 kb on + strand, within GFF3405at 229.396 kb on - strand, within GFF3405at 229.396 kb on - strand, within GFF3405at 229.452 kb on + strand, within GFF3405at 229.453 kb on - strand, within GFF3405

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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225,917 + GFF3403 0.22 -0.1
225,918 - GFF3403 0.22 -0.2
225,918 - GFF3403 0.22 -0.1
225,918 - GFF3403 0.22 -1.1
226,280 + GFF3403 0.60 -0.2
226,280 + GFF3403 0.60 -0.2
226,280 + GFF3403 0.60 -3.0
226,281 - GFF3403 0.60 -1.1
226,281 - GFF3403 0.60 -1.4
226,281 - GFF3403 0.60 +1.3
226,281 - GFF3403 0.60 -0.3
226,281 - GFF3403 0.60 -0.9
226,296 - GFF3403 0.62 -1.0
226,304 + GFF3403 0.63 -0.1
226,304 + GFF3403 0.63 -1.5
226,304 + GFF3403 0.63 -0.3
226,340 + GFF3403 0.67 -1.3
226,340 + GFF3403 0.67 +2.1
226,340 + GFF3403 0.67 -1.7
226,340 + GFF3403 0.67 -0.7
226,340 + GFF3403 0.67 -1.1
226,341 - GFF3403 0.67 -1.2
226,341 - GFF3403 0.67 +0.6
226,341 - GFF3403 0.67 +0.2
226,553 + GFF3403 0.89 +0.6
226,553 + GFF3403 0.89 +0.3
226,553 + GFF3403 0.89 +0.1
226,553 + GFF3403 0.89 -1.5
226,553 + GFF3403 0.89 +0.3
226,554 - GFF3403 0.89 -0.0
226,554 - GFF3403 0.89 +0.2
226,652 + +0.2
226,848 + +0.4
226,849 - -0.4
226,870 - +0.4
226,953 + -0.8
226,974 + GFF3404 0.10 -0.7
226,974 + GFF3404 0.10 -0.4
226,974 + GFF3404 0.10 +0.0
226,974 + GFF3404 0.10 -1.0
226,974 + GFF3404 0.10 +1.9
226,974 + GFF3404 0.10 -1.1
226,975 - GFF3404 0.10 -0.7
226,975 - GFF3404 0.10 -1.7
226,975 - GFF3404 0.10 -1.1
226,975 - GFF3404 0.10 -2.3
226,975 - GFF3404 0.10 +0.7
227,245 - GFF3404 0.26 +0.5
227,604 + GFF3404 0.48 -0.3
228,018 + GFF3404 0.72 -1.7
228,018 + GFF3404 0.72 -0.7
228,018 + GFF3404 0.72 -1.8
228,018 + GFF3404 0.72 -0.2
228,018 + GFF3404 0.72 -0.3
228,018 + GFF3404 0.72 +0.5
228,018 + GFF3404 0.72 -0.7
228,018 + GFF3404 0.72 +0.6
228,018 + GFF3404 0.72 -0.4
228,018 + GFF3404 0.72 -0.7
228,018 + GFF3404 0.72 -2.1
228,019 - GFF3404 0.72 -1.0
228,019 - GFF3404 0.72 +1.1
228,019 - GFF3404 0.72 -2.4
228,019 - GFF3404 0.72 +1.2
228,019 - GFF3404 0.72 +0.9
228,019 - GFF3404 0.72 -0.1
228,019 - GFF3404 0.72 -0.9
228,019 - GFF3404 0.72 -1.7
228,019 - GFF3404 0.72 -2.1
228,019 - GFF3404 0.72 -1.2
228,019 - GFF3404 0.72 -0.4
228,019 - GFF3404 0.72 -1.0
228,132 + GFF3404 0.79 -0.1
228,132 + GFF3404 0.79 -0.7
228,133 - GFF3404 0.79 -0.9
228,133 - GFF3404 0.79 -0.8
228,133 - GFF3404 0.79 -1.2
228,133 - GFF3404 0.79 -0.0
228,133 - GFF3404 0.79 -0.1
228,133 - GFF3404 0.79 -0.1
228,133 - GFF3404 0.79 -1.2
228,345 - -0.4
228,438 + +0.0
228,438 + -0.9
228,439 - -2.2
228,439 - -0.2
228,439 - +0.8
228,439 - -0.8
228,439 - -1.0
228,439 - -0.4
228,532 - -0.9
228,532 - -0.2
228,532 - +0.5
228,532 - -0.6
228,666 + GFF3405 0.11 -0.1
228,666 + GFF3405 0.11 -0.5
228,666 + GFF3405 0.11 -1.2
228,667 - GFF3405 0.11 -1.0
228,667 - GFF3405 0.11 +0.5
228,667 - GFF3405 0.11 -0.3
228,667 - GFF3405 0.11 -0.6
228,735 + GFF3405 0.15 -0.5
228,933 + GFF3405 0.29 -0.4
228,933 + GFF3405 0.29 +0.5
228,933 + GFF3405 0.29 -0.1
228,933 + GFF3405 0.29 +1.9
228,933 + GFF3405 0.29 +1.1
228,934 - GFF3405 0.29 -0.7
228,934 - GFF3405 0.29 +0.2
228,934 - GFF3405 0.29 -2.0
228,934 - GFF3405 0.29 +0.9
228,934 - GFF3405 0.29 +0.2
228,934 - GFF3405 0.29 -0.2
228,934 - GFF3405 0.29 +1.5
228,934 - GFF3405 0.29 -0.1
228,934 - GFF3405 0.29 +0.0
228,996 + GFF3405 0.34 -0.7
228,996 + GFF3405 0.34 -0.5
228,996 + GFF3405 0.34 +0.9
228,996 + GFF3405 0.34 +0.0
228,996 + GFF3405 0.34 -0.0
228,996 + GFF3405 0.34 +0.7
228,996 + GFF3405 0.34 -0.4
228,996 + GFF3405 0.34 -0.7
228,996 + GFF3405 0.34 +0.0
228,997 - GFF3405 0.34 +0.0
228,997 - GFF3405 0.34 -0.8
228,997 - GFF3405 0.34 -1.8
228,997 - GFF3405 0.34 -0.3
228,997 - GFF3405 0.34 -0.4
228,997 - GFF3405 0.34 +0.7
228,997 - GFF3405 0.34 -0.1
228,997 - GFF3405 0.34 +0.4
228,997 - GFF3405 0.34 -0.7
228,997 - GFF3405 0.34 +0.2
229,143 + GFF3405 0.44 -0.5
229,143 + GFF3405 0.44 -1.0
229,143 + GFF3405 0.44 -1.5
229,144 - GFF3405 0.44 -1.3
229,144 - GFF3405 0.44 -0.9
229,144 - GFF3405 0.44 +1.1
229,144 - GFF3405 0.44 +0.1
229,381 - GFF3405 0.61 -0.1
229,395 + GFF3405 0.62 +0.5
229,395 + GFF3405 0.62 -0.7
229,396 - GFF3405 0.62 +0.5
229,396 - GFF3405 0.62 +0.4
229,452 + GFF3405 0.66 -1.2
229,453 - GFF3405 0.66 +0.5

Or see this region's nucleotide sequence