Strain Fitness in Variovorax sp. SCN45 around GFF3203

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
21,642	+				-0.1
21,642	+				-2.1
21,643	-				-0.1
21,644	+				-0.6
21,644	+				-1.5
21,644	+				+0.1
21,644	+				-0.7
21,644	+				-1.5
21,644	+				+1.5
21,645	-				-0.1
21,645	-				-0.4
21,645	-				-0.2
21,645	-				+1.2
21,645	-				+0.3
21,645	-				-0.4
21,645	-				-0.5
21,645	-				-1.2
21,648	+				+0.4
21,648	+				-0.2
21,648	+				+0.7
21,648	+				+0.8
21,648	+				-0.2
21,648	+				-1.5
21,648	+				+1.7
21,648	+				-0.2
21,649	-				-0.4
21,649	-				+0.3
21,777	+		GFF3202	0.21	+2.3
21,984	+		GFF3202	0.66	+0.3
22,070	+		GFF3202	0.84	+0.8
22,070	+		GFF3202	0.84	-1.9
22,089	+		GFF3202	0.88	-0.7
22,090	-		GFF3202	0.88	+0.3
22,090	-		GFF3202	0.88	+0.1
22,090	-		GFF3202	0.88	-0.8
22,207	+				-0.8
22,208	-				+0.2
22,208	-				-0.1
22,227	+				-0.3
22,351	-				-0.2
22,351	-				-1.7
22,387	-				-1.1
22,405	+				-0.9
22,405	+				-0.2
22,406	-				+0.1
22,406	-				-0.5
22,406	-				-0.3
22,446	+				+0.7
22,446	+				-0.2
22,597	+		GFF3203	0.18	-0.0
22,597	+		GFF3203	0.18	-0.9
22,597	+		GFF3203	0.18	+0.7
22,598	-		GFF3203	0.18	+0.3
22,635	-		GFF3203	0.24	+1.9
22,705	+		GFF3203	0.35	+1.2
22,759	+		GFF3203	0.43	-0.9
22,760	-		GFF3203	0.43	-1.1
22,760	-		GFF3203	0.43	+0.3
22,820	+		GFF3203	0.52	-0.6
23,015	+		GFF3203	0.83	-0.2
23,081	-				+0.7
23,110	+				+0.0
23,111	-				-0.4
23,126	-				-0.6
23,126	-				-1.4
23,126	-				-0.1
23,182	+				-0.3
23,183	-				-0.5
23,255	+		GFF3204	0.20	-0.1
23,255	+		GFF3204	0.20	+1.1
23,350	+		GFF3204	0.54	-1.7
23,350	+		GFF3204	0.54	+1.4
23,351	-		GFF3204	0.54	-0.5
23,351	-		GFF3204	0.54	+0.7
23,640	+		GFF3205	0.12	+0.3
23,641	-		GFF3205	0.13	-1.1
23,641	-		GFF3205	0.13	-0.0
23,719	-		GFF3205	0.48	+0.9
23,781	-		GFF3205	0.77	-0.3
23,787	+		GFF3205	0.79	-0.3
23,883	+				-0.4
23,883	+				-0.6
23,884	-				+0.2
23,884	-				-0.6
23,888	-				-0.3
23,888	-				+0.8
24,119	+		GFF3206	0.59	-0.7
24,119	+		GFF3206	0.59	-0.8