Strain Fitness in Variovorax sp. SCN45 around GFF3158

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
593,345	+				-0.1
593,346	-				-0.5
593,360	+				-2.6
593,360	+				+1.5
593,360	+				-1.2
593,361	-				-1.8
593,361	-				-0.2
593,363	+				-0.9
593,363	+				-1.2
593,364	-				+1.0
593,885	+		GFF3157	0.58	-0.0
593,885	+		GFF3157	0.58	-1.4
593,903	+		GFF3157	0.60	+0.1
593,924	+		GFF3157	0.62	-0.8
593,924	+		GFF3157	0.62	-1.0
593,924	+		GFF3157	0.62	+1.6
594,325	-				-0.9
594,325	-				-0.0
594,499	-		GFF3158	0.30	-2.1
594,612	+		GFF3158	0.45	-0.6
594,753	+		GFF3158	0.65	-3.3
594,798	+		GFF3158	0.71	+0.3
594,956	-				+0.3
595,145	+				-0.4
595,212	-				-0.2
595,212	-				-1.0
595,470	-		GFF3159	0.12	-1.8
595,470	-		GFF3159	0.12	-1.6
595,571	+		GFF3159	0.15	+0.3
595,571	+		GFF3159	0.15	-1.4
595,572	-		GFF3159	0.15	-0.6
595,572	-		GFF3159	0.15	-1.0
595,625	+		GFF3159	0.17	+0.2
595,625	+		GFF3159	0.17	-0.3
595,626	-		GFF3159	0.17	+0.2
595,626	-		GFF3159	0.17	+0.2
595,727	+		GFF3159	0.21	+0.2
595,728	-		GFF3159	0.21	-0.8
595,821	-		GFF3159	0.24	+0.7
595,884	-		GFF3159	0.26	+0.5
595,907	+		GFF3159	0.27	+0.2
595,907	+		GFF3159	0.27	+0.1
595,907	+		GFF3159	0.27	-1.0
595,908	-		GFF3159	0.27	-1.1
595,908	-		GFF3159	0.27	-1.2
595,931	+		GFF3159	0.28	+0.2
595,932	-		GFF3159	0.28	-0.1
595,958	+		GFF3159	0.28	-0.4
595,958	+		GFF3159	0.28	-1.0
595,958	+		GFF3159	0.28	-0.3