Strain Fitness in Variovorax sp. SCN45 around GFF2944

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2942 and GFF2943 overlap by 4 nucleotidesGFF2943 and GFF2944 are separated by 39 nucleotidesGFF2944 and GFF2945 are separated by 23 nucleotidesGFF2945 and GFF2946 overlap by 4 nucleotidesGFF2946 and GFF2947 overlap by 4 nucleotides GFF2942 - Epoxide hydrolase (EC 3.3.2.9), at 368,639 to 369,559 GFF2942 GFF2943 - S-formylglutathione hydrolase (EC 3.1.2.12), at 369,556 to 370,434 GFF2943 GFF2944 - Acetyltransferase, at 370,474 to 370,977 GFF2944 GFF2945 - Possible glyoxylase family protein (Lactoylglutathione lyase) (EC 4.4.1.5), at 371,001 to 371,390 GFF2945 GFF2946 - Regulator of competence-specific genes, at 371,387 to 371,797 GFF2946 GFF2947 - 3'-5' exonuclease, at 371,794 to 372,408 GFF2947 Position (kb) 370 371Strain fitness (log2 ratio) -2 -1 0 1 2at 369.667 kb on + strand, within GFF2943at 369.668 kb on - strand, within GFF2943at 369.712 kb on + strand, within GFF2943at 369.712 kb on + strand, within GFF2943at 369.712 kb on + strand, within GFF2943at 369.713 kb on - strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 370.144 kb on + strand, within GFF2943at 370.145 kb on - strand, within GFF2943at 370.357 kb on + strandat 370.357 kb on + strandat 370.358 kb on - strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.370 kb on - strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.470 kb on + strandat 370.471 kb on - strandat 370.729 kb on + strand, within GFF2944at 370.729 kb on + strand, within GFF2944at 370.729 kb on + strand, within GFF2944at 370.729 kb on + strand, within GFF2944at 370.730 kb on - strand, within GFF2944at 370.730 kb on - strand, within GFF2944at 370.730 kb on - strand, within GFF2944at 370.867 kb on + strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.936 kb on + strandat 370.936 kb on + strandat 370.937 kb on - strandat 371.058 kb on + strand, within GFF2945at 371.058 kb on + strand, within GFF2945at 371.058 kb on + strand, within GFF2945at 371.058 kb on + strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.067 kb on + strand, within GFF2945at 371.067 kb on + strand, within GFF2945at 371.067 kb on + strand, within GFF2945at 371.068 kb on - strand, within GFF2945at 371.094 kb on + strand, within GFF2945at 371.094 kb on + strand, within GFF2945at 371.094 kb on + strand, within GFF2945at 371.095 kb on - strand, within GFF2945at 371.095 kb on - strand, within GFF2945at 371.095 kb on - strand, within GFF2945at 371.153 kb on + strand, within GFF2945at 371.334 kb on + strand, within GFF2945at 371.334 kb on + strand, within GFF2945at 371.337 kb on + strand, within GFF2945at 371.337 kb on + strand, within GFF2945at 371.337 kb on + strand, within GFF2945at 371.338 kb on - strand, within GFF2945at 371.338 kb on - strand, within GFF2945at 371.338 kb on - strand, within GFF2945at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.520 kb on - strand, within GFF2946at 371.520 kb on - strand, within GFF2946at 371.520 kb on - strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.550 kb on - strand, within GFF2946at 371.550 kb on - strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.583 kb on - strand, within GFF2946at 371.583 kb on - strand, within GFF2946at 371.583 kb on - strand, within GFF2946at 371.615 kb on + strand, within GFF2946at 371.616 kb on - strand, within GFF2946at 371.681 kb on + strand, within GFF2946

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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369,667 + GFF2943 0.13 -1.7
369,668 - GFF2943 0.13 +0.6
369,712 + GFF2943 0.18 +0.4
369,712 + GFF2943 0.18 +0.4
369,712 + GFF2943 0.18 -1.5
369,713 - GFF2943 0.18 -0.1
369,889 + GFF2943 0.38 -0.6
369,889 + GFF2943 0.38 -0.2
369,889 + GFF2943 0.38 -0.5
369,889 + GFF2943 0.38 -0.1
369,889 + GFF2943 0.38 +0.6
369,889 + GFF2943 0.38 +0.2
369,890 - GFF2943 0.38 -0.3
369,890 - GFF2943 0.38 -0.0
369,890 - GFF2943 0.38 -2.3
369,890 - GFF2943 0.38 -0.1
370,144 + GFF2943 0.67 +0.6
370,145 - GFF2943 0.67 +0.2
370,357 + -1.7
370,357 + +0.8
370,358 - +0.1
370,369 + -0.8
370,369 + -1.5
370,369 + -0.4
370,369 + -1.4
370,370 - -0.3
370,372 + +0.2
370,372 + +0.9
370,372 + -0.7
370,372 + -0.4
370,372 + +0.2
370,372 + -1.7
370,372 + -0.8
370,372 + -0.4
370,372 + -2.3
370,372 + +1.2
370,372 + +0.7
370,373 - +0.1
370,373 - +0.2
370,373 - +0.4
370,373 - -0.3
370,373 - -0.2
370,373 - -2.0
370,373 - -0.5
370,373 - +2.4
370,373 - +1.6
370,373 - -1.2
370,373 - -0.1
370,373 - -0.0
370,470 + -0.1
370,471 - +0.2
370,729 + GFF2944 0.51 -1.2
370,729 + GFF2944 0.51 +0.6
370,729 + GFF2944 0.51 +0.5
370,729 + GFF2944 0.51 -0.4
370,730 - GFF2944 0.51 +1.6
370,730 - GFF2944 0.51 -1.0
370,730 - GFF2944 0.51 -0.2
370,867 + GFF2944 0.78 -0.1
370,868 - GFF2944 0.78 +0.6
370,868 - GFF2944 0.78 +0.5
370,868 - GFF2944 0.78 -0.3
370,868 - GFF2944 0.78 -0.3
370,868 - GFF2944 0.78 -0.5
370,936 + +0.1
370,936 + -1.0
370,937 - -0.2
371,058 + GFF2945 0.15 +0.9
371,058 + GFF2945 0.15 -1.2
371,058 + GFF2945 0.15 -0.2
371,058 + GFF2945 0.15 -0.4
371,059 - GFF2945 0.15 -0.1
371,059 - GFF2945 0.15 +0.1
371,059 - GFF2945 0.15 -1.4
371,059 - GFF2945 0.15 -0.3
371,059 - GFF2945 0.15 +0.3
371,059 - GFF2945 0.15 -1.2
371,059 - GFF2945 0.15 +0.8
371,059 - GFF2945 0.15 -0.2
371,059 - GFF2945 0.15 -0.8
371,059 - GFF2945 0.15 +0.3
371,059 - GFF2945 0.15 +0.8
371,059 - GFF2945 0.15 -0.1
371,059 - GFF2945 0.15 -1.7
371,059 - GFF2945 0.15 +1.1
371,059 - GFF2945 0.15 +1.0
371,059 - GFF2945 0.15 -0.1
371,059 - GFF2945 0.15 -0.5
371,059 - GFF2945 0.15 -1.0
371,059 - GFF2945 0.15 +0.0
371,067 + GFF2945 0.17 -0.2
371,067 + GFF2945 0.17 -1.1
371,067 + GFF2945 0.17 +0.0
371,068 - GFF2945 0.17 +0.5
371,094 + GFF2945 0.24 +1.2
371,094 + GFF2945 0.24 -0.2
371,094 + GFF2945 0.24 +0.4
371,095 - GFF2945 0.24 +0.2
371,095 - GFF2945 0.24 -0.2
371,095 - GFF2945 0.24 -0.1
371,153 + GFF2945 0.39 -0.2
371,334 + GFF2945 0.85 -0.4
371,334 + GFF2945 0.85 +0.4
371,337 + GFF2945 0.86 +0.3
371,337 + GFF2945 0.86 +0.0
371,337 + GFF2945 0.86 +0.6
371,338 - GFF2945 0.86 +0.2
371,338 - GFF2945 0.86 -0.2
371,338 - GFF2945 0.86 -1.8
371,519 + GFF2946 0.32 -0.8
371,519 + GFF2946 0.32 -0.3
371,519 + GFF2946 0.32 -0.3
371,519 + GFF2946 0.32 -2.5
371,519 + GFF2946 0.32 -0.8
371,519 + GFF2946 0.32 -0.7
371,520 - GFF2946 0.32 -1.3
371,520 - GFF2946 0.32 -0.8
371,520 - GFF2946 0.32 -1.1
371,549 + GFF2946 0.39 -0.4
371,549 + GFF2946 0.39 +0.4
371,549 + GFF2946 0.39 +0.7
371,549 + GFF2946 0.39 -0.0
371,550 - GFF2946 0.40 +0.6
371,550 - GFF2946 0.40 +0.0
371,582 + GFF2946 0.47 -0.0
371,582 + GFF2946 0.47 +0.1
371,582 + GFF2946 0.47 -0.0
371,582 + GFF2946 0.47 -2.5
371,583 - GFF2946 0.48 +0.9
371,583 - GFF2946 0.48 -0.5
371,583 - GFF2946 0.48 -0.8
371,615 + GFF2946 0.55 -0.7
371,616 - GFF2946 0.56 -0.8
371,681 + GFF2946 0.72 +0.3

Or see this region's nucleotide sequence