Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2893 and GFF2894 are separated by 41 nucleotides GFF2894 and GFF2895 overlap by 4 nucleotides
GFF2893 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 318,841 to 319,827
GFF2893
GFF2894 - Transcriptional regulator, GntR family, at 319,869 to 320,651
GFF2894
GFF2895 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 320,648 to 321,766
GFF2895
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1 at 319.244 kb on + strand, within GFF2893 at 319.244 kb on + strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.355 kb on + strand, within GFF2893 at 319.386 kb on - strand, within GFF2893 at 319.386 kb on - strand, within GFF2893 at 319.386 kb on - strand, within GFF2893 at 319.652 kb on + strand, within GFF2893 at 319.652 kb on + strand, within GFF2893 at 319.653 kb on - strand, within GFF2893 at 319.718 kb on + strand, within GFF2893 at 320.216 kb on - strand, within GFF2894 at 320.216 kb on - strand, within GFF2894 at 320.410 kb on + strand, within GFF2894 at 320.411 kb on - strand, within GFF2894 at 320.781 kb on + strand, within GFF2895 at 320.781 kb on + strand, within GFF2895 at 320.781 kb on + strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.931 kb on + strand, within GFF2895 at 320.931 kb on + strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.976 kb on + strand, within GFF2895 at 321.531 kb on + strand, within GFF2895 at 321.532 kb on - strand, within GFF2895 at 321.532 kb on - strand, within GFF2895 at 321.532 kb on - strand, within GFF2895
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 319,244 + GFF2893 0.41 -1.5 319,244 + GFF2893 0.41 -1.1 319,245 - GFF2893 0.41 +0.2 319,245 - GFF2893 0.41 +0.4 319,245 - GFF2893 0.41 -0.2 319,245 - GFF2893 0.41 -0.3 319,245 - GFF2893 0.41 +0.4 319,355 + GFF2893 0.52 -2.1 319,386 - GFF2893 0.55 -0.4 319,386 - GFF2893 0.55 +0.5 319,386 - GFF2893 0.55 -0.1 319,652 + GFF2893 0.82 +0.9 319,652 + GFF2893 0.82 -1.0 319,653 - GFF2893 0.82 -0.5 319,718 + GFF2893 0.89 +0.0 320,216 - GFF2894 0.44 -0.6 320,216 - GFF2894 0.44 -0.4 320,410 + GFF2894 0.69 -1.0 320,411 - GFF2894 0.69 -0.2 320,781 + GFF2895 0.12 -0.2 320,781 + GFF2895 0.12 -0.4 320,781 + GFF2895 0.12 -0.1 320,782 - GFF2895 0.12 -0.3 320,782 - GFF2895 0.12 +0.0 320,782 - GFF2895 0.12 -0.4 320,907 + GFF2895 0.23 -0.8 320,907 + GFF2895 0.23 +1.1 320,907 + GFF2895 0.23 -1.3 320,907 + GFF2895 0.23 +0.9 320,907 + GFF2895 0.23 +0.1 320,908 - GFF2895 0.23 +1.3 320,908 - GFF2895 0.23 -1.4 320,908 - GFF2895 0.23 -0.1 320,908 - GFF2895 0.23 -1.2 320,931 + GFF2895 0.25 -1.2 320,931 + GFF2895 0.25 -0.4 320,932 - GFF2895 0.25 +0.4 320,932 - GFF2895 0.25 +0.1 320,932 - GFF2895 0.25 +0.0 320,932 - GFF2895 0.25 +1.1 320,976 + GFF2895 0.29 -0.2 321,531 + GFF2895 0.79 -0.2 321,532 - GFF2895 0.79 +0.6 321,532 - GFF2895 0.79 +0.0 321,532 - GFF2895 0.79 -1.3
Or see this region's nucleotide sequence