Strain Fitness in Variovorax sp. SCN45 around GFF2708

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
139,181	+				-1.6
139,181	+				-0.0
139,181	+				-0.3
139,181	+				+0.6
139,181	+				-0.3
139,181	+				-1.7
139,181	+				+0.1
139,181	+				-0.2
139,189	+				+0.4
139,189	+				+1.4
139,190	-				-0.1
139,190	-				-0.5
139,190	-				-0.3
139,190	-				-1.2
139,213	+				-2.0
139,213	+				+0.2
139,213	+				-0.8
139,213	+				-0.1
139,213	+				+0.0
139,213	+				+0.6
139,214	-				-1.0
139,214	-				-1.7
139,214	-				-0.7
139,214	-				-0.2
139,214	-				+0.6
139,240	+				-0.7
139,240	+				-0.3
139,250	-				+0.2
139,298	+				-0.5
139,308	-				-0.3
139,349	+				-0.2
139,349	+				-0.8
139,349	+				-0.3
139,349	+				+0.2
139,349	+				+0.5
139,349	+				+1.3
139,349	+				-0.5
139,349	+				-0.8
139,349	+				+0.1
139,349	+				+0.0
139,349	+				-0.2
139,349	+				+0.6
139,349	+				+0.4
139,349	+				+0.1
139,349	+				-0.2
139,349	+				+0.1
139,349	+				-0.1
139,350	-				-1.3
139,350	-				-0.5
139,350	-				-0.7
139,350	-				-0.0
139,350	-				-0.2
139,350	-				-0.7
139,350	-				-0.0
139,350	-				+0.6
139,350	-				+0.1
139,350	-				-0.2
139,350	-				+0.6
139,350	-				+0.2
139,350	-				+1.6
139,382	+				+0.8
139,396	+				-0.7
139,396	+				+0.2
139,396	+				+0.3
139,396	+				-1.4
139,396	+				-0.4
139,396	+				-0.8
139,396	+				+0.4
139,396	+				-0.3
139,396	+				-0.7
139,396	+				-0.1
139,396	+				+0.6
139,396	+				-1.5
139,396	+				-0.6
139,397	-				-0.6
139,397	-				-0.9
139,397	-				-0.4
139,397	-				-0.1
139,397	-				-0.0
139,397	-				-0.2
139,397	-				-0.3
139,397	-				-0.7
139,397	-				+0.7
139,397	-				+2.0
139,397	-				-0.9
139,397	-				+0.0
139,397	-				-0.9
139,397	-				-1.7
139,412	+				-0.2
139,412	+				-0.1
139,413	-				+0.2
139,413	-				+0.5
139,413	-				-0.2
139,413	-				-0.3
139,413	-				-0.2
139,560	+				-0.7
139,657	+				-1.5
139,657	+				+0.1
139,657	+				-0.3
139,657	+				+0.1
139,658	-				-2.6
139,658	-				-0.9
139,658	-				-2.2
139,658	-				-0.4
139,658	-				-0.1
139,703	+				+0.0
139,703	+				+0.6
139,703	+				-0.8
139,704	-				-1.0
139,704	-				-0.2
139,708	+				-0.5
139,709	-				-1.2
139,811	+				-1.3
139,812	-				+0.2
139,812	-				+0.1
139,812	-				-0.6
139,812	-				-0.2
139,813	+				-0.1
139,814	-				+0.3
139,814	-				+0.4
139,834	-				-0.5
139,852	+				-0.5
140,098	+				-0.5
140,160	+				-0.9
140,161	-				+0.3
140,316	+		GFF2708	0.50	-1.3
140,397	-		GFF2708	0.76	+0.0
140,470	-				-1.6
140,479	+				-1.1
140,480	-				-1.6
140,490	+				-2.0
140,490	+				-1.3
140,491	-				-0.2
140,491	-				+0.1
140,491	-				-0.3
140,518	+				-0.1
140,519	-				-0.4
140,669	+				-0.1
140,669	+				+0.1
140,669	+				+0.5
140,669	+				-0.2
140,669	+				+0.3
140,669	+				+0.3
140,669	+				-0.0
140,670	-				-0.4
140,670	-				-0.7
140,762	+		GFF2709	0.12	-0.7
140,762	+		GFF2709	0.12	-0.4
140,763	-		GFF2709	0.12	+1.0
140,763	-		GFF2709	0.12	+0.7
140,763	-		GFF2709	0.12	-0.7
140,763	-		GFF2709	0.12	-0.4
140,765	+		GFF2709	0.12	-0.2
140,765	+		GFF2709	0.12	+1.4
140,765	+		GFF2709	0.12	-0.4
140,765	+		GFF2709	0.12	-1.0
140,765	+		GFF2709	0.12	+0.1
140,765	+		GFF2709	0.12	-0.4
140,766	-		GFF2709	0.12	+1.0
140,766	-		GFF2709	0.12	-0.1
140,766	-		GFF2709	0.12	-0.7
140,867	+		GFF2709	0.18	-0.4
140,894	+		GFF2709	0.19	-1.4
140,894	+		GFF2709	0.19	-0.5
140,894	+		GFF2709	0.19	+0.4
140,895	-		GFF2709	0.19	+0.0
140,945	+		GFF2709	0.22	-0.9
140,945	+		GFF2709	0.22	-0.3
140,945	+		GFF2709	0.22	+0.3
140,945	+		GFF2709	0.22	-0.2
140,945	+		GFF2709	0.22	-0.0
140,945	+		GFF2709	0.22	-0.3
140,945	+		GFF2709	0.22	-0.4
140,946	-		GFF2709	0.22	-0.0
140,946	-		GFF2709	0.22	+0.3
140,946	-		GFF2709	0.22	-0.6
140,946	-		GFF2709	0.22	-0.6
140,946	-		GFF2709	0.22	-0.6
140,946	-		GFF2709	0.22	+0.6
140,946	-		GFF2709	0.22	-0.2
140,946	-		GFF2709	0.22	+0.9
140,946	-		GFF2709	0.22	+3.2
140,946	-		GFF2709	0.22	-0.8
140,954	+		GFF2709	0.23	+1.0
140,954	+		GFF2709	0.23	-2.7
140,954	+		GFF2709	0.23	+1.5
140,954	+		GFF2709	0.23	+0.2
140,954	+		GFF2709	0.23	-0.7
140,954	+		GFF2709	0.23	+0.1
140,954	+		GFF2709	0.23	-1.6
140,954	+		GFF2709	0.23	-0.5
140,954	+		GFF2709	0.23	-0.4
140,954	+		GFF2709	0.23	-1.7
140,955	-		GFF2709	0.23	-2.0
140,955	-		GFF2709	0.23	-0.2
140,955	-		GFF2709	0.23	+0.0
140,955	-		GFF2709	0.23	+0.8
140,955	-		GFF2709	0.23	-0.4
140,955	-		GFF2709	0.23	+0.4
140,955	-		GFF2709	0.23	+0.2
140,955	-		GFF2709	0.23	+0.2
140,975	+		GFF2709	0.24	-0.4
140,975	+		GFF2709	0.24	+0.1
140,975	+		GFF2709	0.24	-1.4
140,976	-		GFF2709	0.24	-1.2
140,983	-		GFF2709	0.24	-0.4
141,071	+		GFF2709	0.29	+0.3
141,071	+		GFF2709	0.29	+0.4
141,072	-		GFF2709	0.29	-0.2
141,140	+		GFF2709	0.33	-0.7
141,317	+		GFF2709	0.43	+0.1
141,467	+		GFF2709	0.51	-0.7
141,467	+		GFF2709	0.51	+1.1
141,467	+		GFF2709	0.51	+0.2
141,467	+		GFF2709	0.51	+0.6