Strain Fitness in Variovorax sp. SCN45 around GFF2661

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
83,151	+				-1.5
83,152	-				-0.1
83,152	-				+0.6
83,152	-				+0.7
83,152	-				-0.3
83,234	+				+0.7
83,234	+				-1.9
83,234	+				-0.6
83,236	+				+0.6
83,236	+				-1.3
83,236	+				-0.2
83,237	-				-0.9
83,237	-				+0.3
83,237	-				-0.1
83,237	-				-0.1
83,310	+				-0.0
83,310	+				-0.8
83,310	+				-0.6
83,311	-				-0.7
83,311	-				+0.5
83,311	-				+1.3
83,538	-		GFF2661	0.24	-0.0
83,667	-		GFF2661	0.34	+1.6
83,769	-		GFF2661	0.42	+0.4
83,769	-		GFF2661	0.42	+0.3
83,769	-		GFF2661	0.42	+1.2
83,974	-		GFF2661	0.58	-0.4
84,554	+				-1.4
84,554	+				-0.1
84,554	+				-1.5
84,555	-				+0.1
84,615	-				-0.0
84,845	+		GFF2662	0.31	-0.1
84,899	+		GFF2662	0.36	-0.7
84,899	+		GFF2662	0.36	-0.6
84,900	-		GFF2662	0.36	+0.6
84,905	+		GFF2662	0.37	-0.3
84,905	+		GFF2662	0.37	-0.6
84,906	-		GFF2662	0.37	-1.1
84,906	-		GFF2662	0.37	-0.6
84,906	-		GFF2662	0.37	-1.3
84,906	-		GFF2662	0.37	-0.6
84,906	-		GFF2662	0.37	+1.0
85,490	+				-0.6
85,490	+				-0.5
85,491	-				-1.3
85,491	-				-1.1
85,491	-				-0.7
85,491	-				-1.7
85,491	-				-0.5