Strain Fitness in Variovorax sp. SCN45 around GFF2625

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2624 and GFF2625 are separated by 156 nucleotidesGFF2625 and GFF2626 are separated by 91 nucleotides GFF2624 - hypothetical protein, at 35,437 to 36,795 GFF2624 GFF2625 - hypothetical protein, at 36,952 to 39,132 GFF2625 GFF2626 - major facilitator superfamily MFS_1, at 39,224 to 40,417 GFF2626 Position (kb) 36 37 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.001 kb on + strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.002 kb on - strand, within GFF2624at 36.104 kb on + strand, within GFF2624at 36.104 kb on + strand, within GFF2624at 36.104 kb on + strand, within GFF2624at 36.115 kb on + strand, within GFF2624at 36.115 kb on + strand, within GFF2624at 36.115 kb on + strand, within GFF2624at 36.116 kb on - strand, within GFF2624at 36.116 kb on - strand, within GFF2624at 36.116 kb on - strand, within GFF2624at 36.181 kb on + strand, within GFF2624at 36.181 kb on + strand, within GFF2624at 36.181 kb on + strand, within GFF2624at 36.182 kb on - strand, within GFF2624at 36.182 kb on - strand, within GFF2624at 36.182 kb on - strand, within GFF2624at 36.230 kb on + strand, within GFF2624at 36.230 kb on + strand, within GFF2624at 36.231 kb on - strand, within GFF2624at 36.231 kb on - strand, within GFF2624at 36.268 kb on + strand, within GFF2624at 36.268 kb on + strand, within GFF2624at 36.268 kb on + strand, within GFF2624at 36.269 kb on - strand, within GFF2624at 36.269 kb on - strand, within GFF2624at 36.269 kb on - strand, within GFF2624at 36.269 kb on - strand, within GFF2624at 36.284 kb on + strand, within GFF2624at 36.284 kb on + strand, within GFF2624at 36.284 kb on + strand, within GFF2624at 36.285 kb on - strand, within GFF2624at 36.285 kb on - strand, within GFF2624at 36.331 kb on + strand, within GFF2624at 36.331 kb on + strand, within GFF2624at 36.332 kb on - strand, within GFF2624at 36.332 kb on - strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.409 kb on + strand, within GFF2624at 36.410 kb on - strand, within GFF2624at 36.410 kb on - strand, within GFF2624at 36.410 kb on - strand, within GFF2624at 36.417 kb on + strand, within GFF2624at 36.418 kb on - strand, within GFF2624at 36.418 kb on - strand, within GFF2624at 36.439 kb on + strand, within GFF2624at 36.439 kb on + strand, within GFF2624at 36.439 kb on + strand, within GFF2624at 36.439 kb on + strand, within GFF2624at 36.440 kb on - strand, within GFF2624at 36.440 kb on - strand, within GFF2624at 36.440 kb on - strand, within GFF2624at 36.440 kb on - strand, within GFF2624at 36.482 kb on + strand, within GFF2624at 36.512 kb on + strand, within GFF2624at 36.586 kb on + strand, within GFF2624at 36.587 kb on - strand, within GFF2624at 36.587 kb on - strand, within GFF2624at 36.587 kb on - strand, within GFF2624at 36.703 kb on + strandat 36.703 kb on + strandat 36.703 kb on + strandat 36.704 kb on - strandat 36.704 kb on - strandat 36.704 kb on - strandat 36.769 kb on + strandat 36.770 kb on - strandat 36.771 kb on + strandat 36.870 kb on + strandat 36.871 kb on - strandat 36.886 kb on + strandat 36.886 kb on + strandat 36.886 kb on + strandat 36.886 kb on + strandat 36.886 kb on + strandat 36.886 kb on + strandat 36.887 kb on - strandat 36.887 kb on - strandat 36.887 kb on - strandat 36.887 kb on - strandat 36.887 kb on - strandat 36.887 kb on - strandat 36.990 kb on + strandat 36.990 kb on + strandat 36.990 kb on + strandat 36.991 kb on - strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.154 kb on + strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.155 kb on - strandat 37.220 kb on - strand, within GFF2625at 37.340 kb on + strand, within GFF2625at 37.445 kb on + strand, within GFF2625at 37.499 kb on + strand, within GFF2625at 37.499 kb on + strand, within GFF2625at 37.500 kb on - strand, within GFF2625at 37.500 kb on - strand, within GFF2625at 37.565 kb on + strand, within GFF2625at 37.565 kb on + strand, within GFF2625at 37.566 kb on - strand, within GFF2625at 37.612 kb on + strand, within GFF2625at 37.641 kb on - strand, within GFF2625at 37.751 kb on + strand, within GFF2625at 37.802 kb on + strand, within GFF2625at 37.802 kb on + strand, within GFF2625at 37.802 kb on + strand, within GFF2625at 37.803 kb on - strand, within GFF2625at 37.803 kb on - strand, within GFF2625at 37.803 kb on - strand, within GFF2625at 37.803 kb on - strand, within GFF2625at 37.803 kb on - strand, within GFF2625at 38.045 kb on + strand, within GFF2625at 38.088 kb on - strand, within GFF2625at 38.409 kb on - strand, within GFF2625at 38.409 kb on - strand, within GFF2625at 38.486 kb on + strand, within GFF2625at 38.486 kb on + strand, within GFF2625at 38.486 kb on + strand, within GFF2625at 38.486 kb on + strand, within GFF2625at 38.487 kb on - strand, within GFF2625at 38.487 kb on - strand, within GFF2625at 38.487 kb on - strand, within GFF2625at 38.487 kb on - strand, within GFF2625at 38.487 kb on - strand, within GFF2625at 38.487 kb on - strand, within GFF2625at 38.487 kb on - strand, within GFF2625at 38.543 kb on + strand, within GFF2625at 38.543 kb on + strand, within GFF2625at 38.544 kb on - strand, within GFF2625at 38.588 kb on + strand, within GFF2625at 38.588 kb on + strand, within GFF2625at 38.588 kb on + strand, within GFF2625at 38.588 kb on + strand, within GFF2625at 38.588 kb on + strand, within GFF2625at 38.589 kb on - strand, within GFF2625at 38.589 kb on - strand, within GFF2625at 38.589 kb on - strand, within GFF2625at 38.589 kb on - strand, within GFF2625at 38.805 kb on - strand, within GFF2625at 38.805 kb on - strand, within GFF2625at 38.805 kb on - strand, within GFF2625at 39.194 kb on + strandat 39.194 kb on + strandat 39.194 kb on + strandat 39.195 kb on - strandat 39.195 kb on - strandat 39.195 kb on - strandat 39.387 kb on + strand, within GFF2626at 39.697 kb on - strand, within GFF2626at 39.714 kb on + strand, within GFF2626at 39.732 kb on + strand, within GFF2626at 39.732 kb on + strand, within GFF2626at 39.732 kb on + strand, within GFF2626at 39.733 kb on - strand, within GFF2626at 39.733 kb on - strand, within GFF2626at 39.733 kb on - strand, within GFF2626

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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36,001 + GFF2624 0.42 +0.3
36,001 + GFF2624 0.42 +0.3
36,001 + GFF2624 0.42 -0.0
36,001 + GFF2624 0.42 +0.2
36,001 + GFF2624 0.42 +0.8
36,001 + GFF2624 0.42 -0.8
36,001 + GFF2624 0.42 -0.4
36,001 + GFF2624 0.42 +1.0
36,001 + GFF2624 0.42 +0.2
36,001 + GFF2624 0.42 +0.6
36,001 + GFF2624 0.42 -1.1
36,001 + GFF2624 0.42 -0.1
36,001 + GFF2624 0.42 -1.4
36,002 - GFF2624 0.42 +1.3
36,002 - GFF2624 0.42 -0.3
36,002 - GFF2624 0.42 +0.6
36,002 - GFF2624 0.42 +1.6
36,002 - GFF2624 0.42 -0.2
36,002 - GFF2624 0.42 +0.2
36,002 - GFF2624 0.42 +0.1
36,002 - GFF2624 0.42 -0.5
36,002 - GFF2624 0.42 -0.2
36,104 + GFF2624 0.49 -0.6
36,104 + GFF2624 0.49 -0.2
36,104 + GFF2624 0.49 -0.1
36,115 + GFF2624 0.50 -0.1
36,115 + GFF2624 0.50 +0.4
36,115 + GFF2624 0.50 +0.8
36,116 - GFF2624 0.50 +0.7
36,116 - GFF2624 0.50 -0.8
36,116 - GFF2624 0.50 -0.2
36,181 + GFF2624 0.55 +0.3
36,181 + GFF2624 0.55 +0.3
36,181 + GFF2624 0.55 -2.0
36,182 - GFF2624 0.55 -0.5
36,182 - GFF2624 0.55 -0.5
36,182 - GFF2624 0.55 -0.1
36,230 + GFF2624 0.58 +1.1
36,230 + GFF2624 0.58 -0.6
36,231 - GFF2624 0.58 -0.2
36,231 - GFF2624 0.58 +0.2
36,268 + GFF2624 0.61 +0.1
36,268 + GFF2624 0.61 +0.5
36,268 + GFF2624 0.61 -0.3
36,269 - GFF2624 0.61 -0.3
36,269 - GFF2624 0.61 +0.1
36,269 - GFF2624 0.61 -1.4
36,269 - GFF2624 0.61 +0.0
36,284 + GFF2624 0.62 +1.1
36,284 + GFF2624 0.62 -0.1
36,284 + GFF2624 0.62 +0.5
36,285 - GFF2624 0.62 +0.1
36,285 - GFF2624 0.62 -0.1
36,331 + GFF2624 0.66 +1.4
36,331 + GFF2624 0.66 -0.2
36,332 - GFF2624 0.66 +0.3
36,332 - GFF2624 0.66 +0.9
36,409 + GFF2624 0.72 +0.3
36,409 + GFF2624 0.72 +0.4
36,409 + GFF2624 0.72 +0.5
36,409 + GFF2624 0.72 +0.5
36,409 + GFF2624 0.72 -0.2
36,409 + GFF2624 0.72 +0.9
36,409 + GFF2624 0.72 +0.4
36,409 + GFF2624 0.72 -1.0
36,409 + GFF2624 0.72 -0.6
36,409 + GFF2624 0.72 +0.8
36,409 + GFF2624 0.72 -0.6
36,409 + GFF2624 0.72 -0.6
36,409 + GFF2624 0.72 +0.2
36,409 + GFF2624 0.72 -0.9
36,410 - GFF2624 0.72 -1.1
36,410 - GFF2624 0.72 -0.5
36,410 - GFF2624 0.72 -0.2
36,417 + GFF2624 0.72 -1.0
36,418 - GFF2624 0.72 -0.6
36,418 - GFF2624 0.72 -1.0
36,439 + GFF2624 0.74 +0.7
36,439 + GFF2624 0.74 -0.3
36,439 + GFF2624 0.74 +0.1
36,439 + GFF2624 0.74 -0.2
36,440 - GFF2624 0.74 +0.0
36,440 - GFF2624 0.74 +0.1
36,440 - GFF2624 0.74 -0.2
36,440 - GFF2624 0.74 +0.4
36,482 + GFF2624 0.77 +0.3
36,512 + GFF2624 0.79 -0.6
36,586 + GFF2624 0.85 +0.3
36,587 - GFF2624 0.85 +0.6
36,587 - GFF2624 0.85 -0.2
36,587 - GFF2624 0.85 -0.3
36,703 + +0.0
36,703 + -0.3
36,703 + +0.2
36,704 - -0.5
36,704 - -1.4
36,704 - -2.4
36,769 + -0.1
36,770 - -2.5
36,771 + -0.7
36,870 + -2.2
36,871 - -0.7
36,886 + -0.7
36,886 + -0.4
36,886 + +0.6
36,886 + -2.3
36,886 + +1.0
36,886 + -0.9
36,887 - +0.3
36,887 - -0.5
36,887 - -1.0
36,887 - -0.1
36,887 - -0.2
36,887 - +0.2
36,990 + +0.4
36,990 + -0.7
36,990 + +0.5
36,991 - -0.6
37,154 + +0.1
37,154 + -1.7
37,154 + -0.2
37,154 + -0.5
37,154 + -0.4
37,154 + -0.2
37,154 + -0.4
37,154 + -0.6
37,154 + -0.7
37,154 + -0.1
37,154 + +0.7
37,154 + -2.1
37,154 + -1.5
37,154 + -1.2
37,154 + -1.5
37,154 + -1.3
37,154 + -0.3
37,155 - +0.9
37,155 - +0.0
37,155 - -0.4
37,155 - -0.4
37,155 - +2.2
37,155 - -0.4
37,155 - -0.1
37,155 - +0.6
37,155 - +0.1
37,155 - +0.2
37,155 - +0.2
37,155 - -0.3
37,220 - GFF2625 0.12 -1.1
37,340 + GFF2625 0.18 +0.4
37,445 + GFF2625 0.23 -0.1
37,499 + GFF2625 0.25 -2.2
37,499 + GFF2625 0.25 +0.2
37,500 - GFF2625 0.25 -0.2
37,500 - GFF2625 0.25 +0.5
37,565 + GFF2625 0.28 -0.3
37,565 + GFF2625 0.28 -0.4
37,566 - GFF2625 0.28 +0.1
37,612 + GFF2625 0.30 +0.2
37,641 - GFF2625 0.32 -0.7
37,751 + GFF2625 0.37 +0.2
37,802 + GFF2625 0.39 -0.9
37,802 + GFF2625 0.39 -0.8
37,802 + GFF2625 0.39 +1.5
37,803 - GFF2625 0.39 +1.2
37,803 - GFF2625 0.39 -0.0
37,803 - GFF2625 0.39 -0.0
37,803 - GFF2625 0.39 -0.2
37,803 - GFF2625 0.39 -2.1
38,045 + GFF2625 0.50 -0.2
38,088 - GFF2625 0.52 -0.9
38,409 - GFF2625 0.67 -0.7
38,409 - GFF2625 0.67 +0.1
38,486 + GFF2625 0.70 -0.7
38,486 + GFF2625 0.70 -0.6
38,486 + GFF2625 0.70 -1.4
38,486 + GFF2625 0.70 -0.3
38,487 - GFF2625 0.70 +0.0
38,487 - GFF2625 0.70 +1.6
38,487 - GFF2625 0.70 +0.3
38,487 - GFF2625 0.70 -0.9
38,487 - GFF2625 0.70 -0.1
38,487 - GFF2625 0.70 -0.1
38,487 - GFF2625 0.70 +0.3
38,543 + GFF2625 0.73 -1.4
38,543 + GFF2625 0.73 -0.8
38,544 - GFF2625 0.73 +2.1
38,588 + GFF2625 0.75 +0.5
38,588 + GFF2625 0.75 -2.3
38,588 + GFF2625 0.75 -0.9
38,588 + GFF2625 0.75 -0.0
38,588 + GFF2625 0.75 -0.4
38,589 - GFF2625 0.75 +1.5
38,589 - GFF2625 0.75 -0.4
38,589 - GFF2625 0.75 +0.3
38,589 - GFF2625 0.75 -0.4
38,805 - GFF2625 0.85 +2.6
38,805 - GFF2625 0.85 +0.5
38,805 - GFF2625 0.85 +0.1
39,194 + -0.8
39,194 + +0.2
39,194 + +0.3
39,195 - -0.3
39,195 - -0.2
39,195 - -0.4
39,387 + GFF2626 0.14 -0.1
39,697 - GFF2626 0.40 +0.6
39,714 + GFF2626 0.41 -0.5
39,732 + GFF2626 0.43 +2.9
39,732 + GFF2626 0.43 +0.4
39,732 + GFF2626 0.43 +0.2
39,733 - GFF2626 0.43 -1.6
39,733 - GFF2626 0.43 +0.2
39,733 - GFF2626 0.43 -0.4

Or see this region's nucleotide sequence