Strain Fitness in Variovorax sp. SCN45 around GFF2265

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2264 and GFF2265 are separated by 166 nucleotidesGFF2265 and GFF2266 are separated by 5 nucleotidesGFF2266 and GFF2267 are separated by 90 nucleotides GFF2264 - Transcriptional regulator, LysR family, at 319,427 to 320,356 GFF2264 GFF2265 - Catechol 1,2-dioxygenase (EC 1.13.11.1), at 320,523 to 321,356 GFF2265 GFF2266 - FIG00441126: hypothetical protein, at 321,362 to 321,967 GFF2266 GFF2267 - Integral membrane protein, at 322,058 to 322,816 GFF2267 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 319.621 kb on - strand, within GFF2264at 319.621 kb on - strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.914 kb on + strand, within GFF2264at 320.016 kb on + strand, within GFF2264at 320.016 kb on + strand, within GFF2264at 320.017 kb on - strand, within GFF2264at 320.017 kb on - strand, within GFF2264at 320.188 kb on - strand, within GFF2264at 320.483 kb on + strandat 320.484 kb on - strandat 320.688 kb on + strand, within GFF2265at 320.688 kb on + strand, within GFF2265at 320.688 kb on + strand, within GFF2265at 320.689 kb on - strand, within GFF2265at 320.689 kb on - strand, within GFF2265at 320.835 kb on + strand, within GFF2265at 320.835 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.911 kb on - strand, within GFF2265at 320.911 kb on - strand, within GFF2265at 320.911 kb on - strand, within GFF2265at 320.991 kb on + strand, within GFF2265at 320.991 kb on + strand, within GFF2265at 320.992 kb on - strand, within GFF2265at 321.093 kb on + strand, within GFF2265at 321.195 kb on + strand, within GFF2265at 321.506 kb on + strand, within GFF2266at 321.506 kb on + strand, within GFF2266at 321.689 kb on + strand, within GFF2266at 321.690 kb on - strand, within GFF2266at 321.746 kb on + strand, within GFF2266at 321.746 kb on + strand, within GFF2266at 321.746 kb on + strand, within GFF2266at 321.747 kb on - strand, within GFF2266at 321.747 kb on - strand, within GFF2266at 321.845 kb on + strand, within GFF2266at 321.845 kb on + strand, within GFF2266at 321.845 kb on + strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.920 kb on + strandat 321.966 kb on - strandat 322.008 kb on + strandat 322.085 kb on + strandat 322.085 kb on + strandat 322.086 kb on - strandat 322.086 kb on - strandat 322.086 kb on - strandat 322.091 kb on + strandat 322.091 kb on + strandat 322.092 kb on - strandat 322.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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319,621 - GFF2264 0.21 -0.1
319,621 - GFF2264 0.21 -0.8
319,629 + GFF2264 0.22 -0.8
319,629 + GFF2264 0.22 -0.6
319,629 + GFF2264 0.22 +0.2
319,629 + GFF2264 0.22 -1.3
319,629 + GFF2264 0.22 -1.2
319,629 + GFF2264 0.22 -0.1
319,630 - GFF2264 0.22 +0.3
319,630 - GFF2264 0.22 +1.8
319,630 - GFF2264 0.22 +1.8
319,630 - GFF2264 0.22 -0.3
319,630 - GFF2264 0.22 -2.7
319,630 - GFF2264 0.22 -0.5
319,630 - GFF2264 0.22 -1.1
319,630 - GFF2264 0.22 -0.2
319,630 - GFF2264 0.22 +1.1
319,630 - GFF2264 0.22 -0.4
319,779 + GFF2264 0.38 -0.4
319,779 + GFF2264 0.38 +1.1
319,779 + GFF2264 0.38 -1.0
319,779 + GFF2264 0.38 +0.1
319,780 - GFF2264 0.38 -0.1
319,780 - GFF2264 0.38 +0.1
319,780 - GFF2264 0.38 +0.3
319,780 - GFF2264 0.38 -0.5
319,780 - GFF2264 0.38 -1.5
319,780 - GFF2264 0.38 +0.5
319,780 - GFF2264 0.38 -0.2
319,914 + GFF2264 0.52 +0.8
320,016 + GFF2264 0.63 +0.7
320,016 + GFF2264 0.63 +0.5
320,017 - GFF2264 0.63 -0.2
320,017 - GFF2264 0.63 +0.0
320,188 - GFF2264 0.82 -0.8
320,483 + -1.1
320,484 - +0.2
320,688 + GFF2265 0.20 +0.3
320,688 + GFF2265 0.20 +0.0
320,688 + GFF2265 0.20 -0.4
320,689 - GFF2265 0.20 +0.8
320,689 - GFF2265 0.20 +0.1
320,835 + GFF2265 0.37 +0.0
320,835 + GFF2265 0.37 +0.1
320,910 + GFF2265 0.46 -0.0
320,910 + GFF2265 0.46 +1.8
320,910 + GFF2265 0.46 +1.4
320,910 + GFF2265 0.46 +0.3
320,911 - GFF2265 0.47 -0.7
320,911 - GFF2265 0.47 -0.5
320,911 - GFF2265 0.47 +0.3
320,991 + GFF2265 0.56 -0.3
320,991 + GFF2265 0.56 +0.8
320,992 - GFF2265 0.56 +0.1
321,093 + GFF2265 0.68 -0.2
321,195 + GFF2265 0.81 -0.2
321,506 + GFF2266 0.24 +0.2
321,506 + GFF2266 0.24 +1.2
321,689 + GFF2266 0.54 +1.3
321,690 - GFF2266 0.54 -0.3
321,746 + GFF2266 0.63 +0.1
321,746 + GFF2266 0.63 +0.2
321,746 + GFF2266 0.63 +0.2
321,747 - GFF2266 0.64 -2.0
321,747 - GFF2266 0.64 -0.2
321,845 + GFF2266 0.80 -0.2
321,845 + GFF2266 0.80 -1.0
321,845 + GFF2266 0.80 +0.1
321,846 - GFF2266 0.80 +0.2
321,846 - GFF2266 0.80 -0.5
321,846 - GFF2266 0.80 +0.1
321,846 - GFF2266 0.80 +0.1
321,846 - GFF2266 0.80 -0.2
321,846 - GFF2266 0.80 +1.2
321,846 - GFF2266 0.80 -1.3
321,846 - GFF2266 0.80 -0.9
321,846 - GFF2266 0.80 +0.1
321,846 - GFF2266 0.80 -0.2
321,920 + -0.9
321,966 - +0.2
322,008 + -0.1
322,085 + -0.9
322,085 + +0.1
322,086 - +1.3
322,086 - -0.4
322,086 - -0.9
322,091 + -0.1
322,091 + -0.0
322,092 - +0.6
322,092 - +0.0

Or see this region's nucleotide sequence