Strain Fitness in Variovorax sp. SCN45 around GFF2255

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
309,578	+		GFF2253	0.41	+0.0
309,578	+		GFF2253	0.41	+0.4
309,579	-		GFF2253	0.41	-0.1
309,745	-				+0.5
309,745	-				-1.7
309,747	-				-0.7
309,747	-				+0.4
309,747	-				+1.5
309,747	-				-0.3
309,747	-				-2.1
309,747	-				+0.8
309,780	+				-1.2
309,781	-				-0.8
309,781	-				-0.2
309,788	+				-0.0
309,969	+		GFF2254	0.25	+0.1
309,970	-		GFF2254	0.25	-0.8
309,970	-		GFF2254	0.25	-0.5
309,982	-		GFF2254	0.27	-1.0
310,003	-		GFF2254	0.31	+0.0
310,003	-		GFF2254	0.31	+0.3
310,003	-		GFF2254	0.31	+0.5
310,077	+		GFF2254	0.42	+0.5
310,078	-		GFF2254	0.42	-0.5
310,078	-		GFF2254	0.42	+0.4
310,078	-		GFF2254	0.42	+1.1
310,078	-		GFF2254	0.42	-0.0
310,097	+		GFF2254	0.45	-0.2
310,098	-		GFF2254	0.45	+0.8
310,387	-				-1.0
310,664	+		GFF2255	0.22	+0.4
310,793	+		GFF2255	0.35	-0.2
310,794	-		GFF2255	0.35	-0.1
310,857	+		GFF2255	0.42	-0.2
310,858	-		GFF2255	0.42	+0.5
310,858	-		GFF2255	0.42	-0.3
311,042	+		GFF2255	0.61	+0.2
311,043	-		GFF2255	0.61	-0.3
311,330	+				-0.5
311,369	+				+0.7
311,613	+		GFF2256	0.21	-0.6
311,634	+		GFF2256	0.24	-0.9
311,635	-		GFF2256	0.24	+1.8
311,635	-		GFF2256	0.24	+0.4
311,862	+		GFF2256	0.51	+0.7
311,863	-		GFF2256	0.51	-1.0
311,928	+		GFF2256	0.58	-0.3
311,929	-		GFF2256	0.59	+2.0
311,934	+		GFF2256	0.59	+1.8
311,934	+		GFF2256	0.59	-0.2
311,935	-		GFF2256	0.59	+1.3
312,222	+				+0.1