Strain Fitness in Variovorax sp. SCN45 around GFF1846

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1845 and GFF1846 are separated by 1 nucleotidesGFF1846 and GFF1847 are separated by 50 nucleotides GFF1845 - Nucleoside ABC transporter, permease protein 1, at 516,192 to 517,343 GFF1845 GFF1846 - Nucleoside ABC transporter, permease protein 2, at 517,345 to 518,265 GFF1846 GFF1847 - Nucleoside ABC transporter, substrate-binding protein, at 518,316 to 519,491 GFF1847 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1 2 3at 516.360 kb on + strand, within GFF1845at 516.360 kb on + strand, within GFF1845at 516.361 kb on - strand, within GFF1845at 516.361 kb on - strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.711 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.012 kb on - strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.115 kb on + strand, within GFF1845at 517.115 kb on + strand, within GFF1845at 517.354 kb on + strandat 517.354 kb on + strandat 517.354 kb on + strandat 517.354 kb on + strandat 517.354 kb on + strandat 517.355 kb on - strandat 517.355 kb on - strandat 517.355 kb on - strandat 517.355 kb on - strandat 517.609 kb on + strand, within GFF1846at 517.609 kb on + strand, within GFF1846at 517.610 kb on - strand, within GFF1846at 517.706 kb on - strand, within GFF1846at 517.706 kb on - strand, within GFF1846at 517.706 kb on - strand, within GFF1846at 517.706 kb on - strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.774 kb on + strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.775 kb on - strand, within GFF1846at 517.817 kb on - strand, within GFF1846at 517.954 kb on + strand, within GFF1846at 517.954 kb on + strand, within GFF1846at 517.955 kb on - strand, within GFF1846at 517.955 kb on - strand, within GFF1846at 517.955 kb on - strand, within GFF1846at 517.969 kb on + strand, within GFF1846at 517.970 kb on - strand, within GFF1846at 517.970 kb on - strand, within GFF1846at 518.074 kb on + strand, within GFF1846at 518.074 kb on + strand, within GFF1846at 518.074 kb on + strand, within GFF1846at 518.074 kb on + strand, within GFF1846at 518.074 kb on + strand, within GFF1846at 518.075 kb on - strand, within GFF1846at 518.075 kb on - strand, within GFF1846at 518.075 kb on - strand, within GFF1846at 518.161 kb on + strand, within GFF1846at 518.161 kb on + strand, within GFF1846at 518.161 kb on + strand, within GFF1846at 518.161 kb on + strand, within GFF1846at 518.161 kb on + strand, within GFF1846at 518.161 kb on + strand, within GFF1846at 518.161 kb on + strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.162 kb on - strand, within GFF1846at 518.251 kb on + strandat 518.251 kb on + strandat 518.263 kb on + strandat 518.264 kb on - strandat 518.264 kb on - strandat 518.264 kb on - strandat 518.264 kb on - strandat 518.264 kb on - strandat 518.502 kb on + strand, within GFF1847at 518.502 kb on + strand, within GFF1847at 518.502 kb on + strand, within GFF1847at 518.502 kb on + strand, within GFF1847at 518.502 kb on + strand, within GFF1847at 518.502 kb on + strand, within GFF1847at 518.503 kb on - strand, within GFF1847at 518.503 kb on - strand, within GFF1847at 518.503 kb on - strand, within GFF1847at 518.503 kb on - strand, within GFF1847at 518.503 kb on - strand, within GFF1847at 518.503 kb on - strand, within GFF1847at 518.694 kb on + strand, within GFF1847at 518.694 kb on + strand, within GFF1847at 518.695 kb on - strand, within GFF1847at 518.695 kb on - strand, within GFF1847at 518.695 kb on - strand, within GFF1847at 518.761 kb on - strand, within GFF1847at 518.787 kb on + strand, within GFF1847at 518.787 kb on + strand, within GFF1847at 518.788 kb on - strand, within GFF1847at 518.802 kb on + strand, within GFF1847at 518.802 kb on + strand, within GFF1847at 518.802 kb on + strand, within GFF1847at 518.803 kb on - strand, within GFF1847at 518.803 kb on - strand, within GFF1847at 518.803 kb on - strand, within GFF1847at 518.803 kb on - strand, within GFF1847at 518.803 kb on - strand, within GFF1847at 518.803 kb on - strand, within GFF1847at 518.813 kb on + strand, within GFF1847at 518.814 kb on + strand, within GFF1847at 518.814 kb on + strand, within GFF1847at 518.814 kb on + strand, within GFF1847at 518.814 kb on + strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 518.815 kb on - strand, within GFF1847at 519.129 kb on + strand, within GFF1847at 519.177 kb on + strand, within GFF1847at 519.177 kb on + strand, within GFF1847at 519.177 kb on + strand, within GFF1847at 519.178 kb on - strand, within GFF1847at 519.178 kb on - strand, within GFF1847at 519.178 kb on - strand, within GFF1847at 519.180 kb on + strand, within GFF1847at 519.180 kb on + strand, within GFF1847at 519.180 kb on + strand, within GFF1847at 519.180 kb on + strand, within GFF1847at 519.180 kb on + strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847at 519.181 kb on - strand, within GFF1847

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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516,360 + GFF1845 0.15 +0.2
516,360 + GFF1845 0.15 -1.0
516,361 - GFF1845 0.15 -0.6
516,361 - GFF1845 0.15 -0.3
516,651 + GFF1845 0.40 +0.7
516,651 + GFF1845 0.40 +3.0
516,651 + GFF1845 0.40 -1.0
516,651 + GFF1845 0.40 +1.5
516,652 - GFF1845 0.40 +1.1
516,652 - GFF1845 0.40 -0.4
516,652 - GFF1845 0.40 -0.2
516,652 - GFF1845 0.40 +0.2
516,675 + GFF1845 0.42 -0.7
516,675 + GFF1845 0.42 +0.6
516,675 + GFF1845 0.42 -0.5
516,675 + GFF1845 0.42 +0.0
516,675 + GFF1845 0.42 +0.0
516,675 + GFF1845 0.42 -0.1
516,675 + GFF1845 0.42 +0.3
516,676 - GFF1845 0.42 +1.2
516,676 - GFF1845 0.42 -0.2
516,676 - GFF1845 0.42 +1.3
516,676 - GFF1845 0.42 -0.0
516,676 - GFF1845 0.42 +1.5
516,711 + GFF1845 0.45 +0.8
517,011 + GFF1845 0.71 +0.9
517,011 + GFF1845 0.71 -0.7
517,011 + GFF1845 0.71 +0.2
517,011 + GFF1845 0.71 +0.0
517,012 - GFF1845 0.71 +0.2
517,113 + GFF1845 0.80 +2.2
517,113 + GFF1845 0.80 -1.3
517,113 + GFF1845 0.80 -0.8
517,113 + GFF1845 0.80 +1.1
517,113 + GFF1845 0.80 -0.9
517,113 + GFF1845 0.80 -0.1
517,113 + GFF1845 0.80 +0.1
517,114 - GFF1845 0.80 +0.3
517,114 - GFF1845 0.80 -0.2
517,114 - GFF1845 0.80 +0.1
517,114 - GFF1845 0.80 +0.1
517,114 - GFF1845 0.80 +0.3
517,114 - GFF1845 0.80 -1.4
517,114 - GFF1845 0.80 +2.2
517,114 - GFF1845 0.80 -0.3
517,114 - GFF1845 0.80 -0.3
517,114 - GFF1845 0.80 -0.1
517,115 + GFF1845 0.80 -1.4
517,115 + GFF1845 0.80 +0.1
517,354 + +0.4
517,354 + -0.5
517,354 + -0.1
517,354 + +0.1
517,354 + +0.4
517,355 - -0.4
517,355 - -0.0
517,355 - -1.0
517,355 - +0.8
517,609 + GFF1846 0.29 -0.1
517,609 + GFF1846 0.29 +0.2
517,610 - GFF1846 0.29 -0.3
517,706 - GFF1846 0.39 +1.3
517,706 - GFF1846 0.39 +0.4
517,706 - GFF1846 0.39 +0.4
517,706 - GFF1846 0.39 +0.5
517,774 + GFF1846 0.47 -0.4
517,774 + GFF1846 0.47 +0.8
517,774 + GFF1846 0.47 +1.6
517,774 + GFF1846 0.47 +0.5
517,774 + GFF1846 0.47 -0.2
517,774 + GFF1846 0.47 +0.1
517,774 + GFF1846 0.47 -1.3
517,774 + GFF1846 0.47 +0.3
517,774 + GFF1846 0.47 -0.0
517,774 + GFF1846 0.47 +0.0
517,774 + GFF1846 0.47 +0.5
517,774 + GFF1846 0.47 -1.1
517,775 - GFF1846 0.47 +1.4
517,775 - GFF1846 0.47 -1.6
517,775 - GFF1846 0.47 -0.6
517,775 - GFF1846 0.47 -0.3
517,775 - GFF1846 0.47 -1.0
517,775 - GFF1846 0.47 +0.0
517,775 - GFF1846 0.47 +1.0
517,775 - GFF1846 0.47 -0.1
517,775 - GFF1846 0.47 +1.8
517,775 - GFF1846 0.47 -2.2
517,817 - GFF1846 0.51 +0.5
517,954 + GFF1846 0.66 +0.2
517,954 + GFF1846 0.66 +0.5
517,955 - GFF1846 0.66 +0.0
517,955 - GFF1846 0.66 +0.5
517,955 - GFF1846 0.66 +1.4
517,969 + GFF1846 0.68 -0.4
517,970 - GFF1846 0.68 -0.1
517,970 - GFF1846 0.68 -0.8
518,074 + GFF1846 0.79 +1.4
518,074 + GFF1846 0.79 +0.1
518,074 + GFF1846 0.79 -0.2
518,074 + GFF1846 0.79 +0.3
518,074 + GFF1846 0.79 +0.2
518,075 - GFF1846 0.79 -0.1
518,075 - GFF1846 0.79 -0.2
518,075 - GFF1846 0.79 -0.1
518,161 + GFF1846 0.89 -0.9
518,161 + GFF1846 0.89 -0.6
518,161 + GFF1846 0.89 -0.2
518,161 + GFF1846 0.89 +0.8
518,161 + GFF1846 0.89 +0.2
518,161 + GFF1846 0.89 +0.3
518,161 + GFF1846 0.89 +1.4
518,162 - GFF1846 0.89 +0.5
518,162 - GFF1846 0.89 -0.3
518,162 - GFF1846 0.89 -0.7
518,162 - GFF1846 0.89 +0.9
518,162 - GFF1846 0.89 -0.1
518,162 - GFF1846 0.89 -0.5
518,162 - GFF1846 0.89 -0.1
518,162 - GFF1846 0.89 +0.2
518,251 + -0.6
518,251 + +0.6
518,263 + -1.3
518,264 - -2.0
518,264 - +0.4
518,264 - +0.4
518,264 - -0.1
518,264 - -1.4
518,502 + GFF1847 0.16 +0.6
518,502 + GFF1847 0.16 -1.0
518,502 + GFF1847 0.16 +1.2
518,502 + GFF1847 0.16 -0.0
518,502 + GFF1847 0.16 -2.3
518,502 + GFF1847 0.16 -0.2
518,503 - GFF1847 0.16 +0.6
518,503 - GFF1847 0.16 -0.2
518,503 - GFF1847 0.16 -0.5
518,503 - GFF1847 0.16 -0.4
518,503 - GFF1847 0.16 -0.7
518,503 - GFF1847 0.16 -1.2
518,694 + GFF1847 0.32 +0.3
518,694 + GFF1847 0.32 -0.5
518,695 - GFF1847 0.32 -0.6
518,695 - GFF1847 0.32 -0.6
518,695 - GFF1847 0.32 +0.1
518,761 - GFF1847 0.38 +0.3
518,787 + GFF1847 0.40 -0.7
518,787 + GFF1847 0.40 +0.3
518,788 - GFF1847 0.40 +0.5
518,802 + GFF1847 0.41 +1.4
518,802 + GFF1847 0.41 +0.3
518,802 + GFF1847 0.41 +0.3
518,803 - GFF1847 0.41 -0.2
518,803 - GFF1847 0.41 -0.7
518,803 - GFF1847 0.41 +0.4
518,803 - GFF1847 0.41 -1.3
518,803 - GFF1847 0.41 +0.0
518,803 - GFF1847 0.41 -0.5
518,813 + GFF1847 0.42 -0.4
518,814 + GFF1847 0.42 -0.7
518,814 + GFF1847 0.42 -0.2
518,814 + GFF1847 0.42 +0.2
518,814 + GFF1847 0.42 +0.2
518,815 - GFF1847 0.42 -0.5
518,815 - GFF1847 0.42 -0.2
518,815 - GFF1847 0.42 +2.1
518,815 - GFF1847 0.42 -0.2
518,815 - GFF1847 0.42 -0.0
518,815 - GFF1847 0.42 +0.1
518,815 - GFF1847 0.42 +0.9
518,815 - GFF1847 0.42 -0.3
518,815 - GFF1847 0.42 -0.1
518,815 - GFF1847 0.42 +1.1
518,815 - GFF1847 0.42 -0.0
518,815 - GFF1847 0.42 -0.7
518,815 - GFF1847 0.42 -0.6
519,129 + GFF1847 0.69 -0.2
519,177 + GFF1847 0.73 -0.0
519,177 + GFF1847 0.73 -0.6
519,177 + GFF1847 0.73 +1.8
519,178 - GFF1847 0.73 -0.5
519,178 - GFF1847 0.73 +0.0
519,178 - GFF1847 0.73 -0.6
519,180 + GFF1847 0.73 +0.8
519,180 + GFF1847 0.73 -0.6
519,180 + GFF1847 0.73 +0.0
519,180 + GFF1847 0.73 -0.8
519,180 + GFF1847 0.73 -0.2
519,181 - GFF1847 0.74 -0.5
519,181 - GFF1847 0.74 +0.7
519,181 - GFF1847 0.74 -1.5
519,181 - GFF1847 0.74 +0.7
519,181 - GFF1847 0.74 -0.1
519,181 - GFF1847 0.74 -1.6
519,181 - GFF1847 0.74 +0.0
519,181 - GFF1847 0.74 -0.1
519,181 - GFF1847 0.74 -0.2
519,181 - GFF1847 0.74 +0.0
519,181 - GFF1847 0.74 +1.8
519,181 - GFF1847 0.74 +0.8
519,181 - GFF1847 0.74 -0.2

Or see this region's nucleotide sequence