Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1808 and GFF1809 are separated by 197 nucleotides GFF1809 and GFF1810 are separated by 281 nucleotides
GFF1808 - no description, at 471,888 to 472,193
GFF1808
GFF1809 - no description, at 472,391 to 472,603
GFF1809
GFF1810 - Histidinol phosphatase and related hydrolases of the PHP family, at 472,885 to 474,567
GFF1810
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.898 kb on + strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.899 kb on - strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.972 kb on + strand at 470.973 kb on - strand at 470.973 kb on - strand at 470.988 kb on + strand at 470.988 kb on + strand at 470.989 kb on - strand at 471.105 kb on + strand at 471.105 kb on + strand at 471.106 kb on - strand at 471.107 kb on + strand at 471.107 kb on + strand at 471.108 kb on - strand at 471.108 kb on - strand at 471.149 kb on - strand at 471.149 kb on - strand at 471.157 kb on + strand at 471.157 kb on + strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.158 kb on - strand at 471.163 kb on + strand at 471.164 kb on - strand at 471.164 kb on - strand at 471.267 kb on + strand at 471.267 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.319 kb on + strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.320 kb on - strand at 471.435 kb on + strand at 471.435 kb on + strand at 471.436 kb on - strand at 471.436 kb on - strand at 471.436 kb on - strand at 471.495 kb on + strand at 471.495 kb on + strand at 471.495 kb on + strand at 471.495 kb on + strand at 471.496 kb on - strand at 471.739 kb on + strand at 471.739 kb on + strand at 471.740 kb on - strand at 471.772 kb on - strand at 471.772 kb on - strand at 471.810 kb on + strand at 471.810 kb on + strand at 471.810 kb on + strand at 471.810 kb on + strand at 471.810 kb on + strand at 471.810 kb on + strand at 471.811 kb on - strand at 471.811 kb on - strand at 471.811 kb on - strand at 471.811 kb on - strand at 471.811 kb on - strand at 471.811 kb on - strand at 471.811 kb on - strand at 471.827 kb on + strand at 471.828 kb on - strand at 471.828 kb on - strand at 471.828 kb on - strand at 471.889 kb on + strand at 471.889 kb on + strand at 471.889 kb on + strand at 471.889 kb on + strand at 471.889 kb on + strand at 471.890 kb on - strand at 471.890 kb on - strand at 471.890 kb on - strand at 471.890 kb on - strand at 471.908 kb on + strand at 471.908 kb on + strand at 471.908 kb on + strand at 471.908 kb on - strand at 471.909 kb on - strand at 471.909 kb on - strand at 471.966 kb on + strand, within GFF1808 at 471.966 kb on + strand, within GFF1808 at 471.966 kb on + strand, within GFF1808 at 471.966 kb on + strand, within GFF1808 at 471.967 kb on - strand, within GFF1808 at 471.967 kb on - strand, within GFF1808 at 471.967 kb on - strand, within GFF1808 at 471.967 kb on - strand, within GFF1808 at 472.031 kb on + strand, within GFF1808 at 472.032 kb on - strand, within GFF1808 at 472.056 kb on - strand, within GFF1808 at 472.100 kb on - strand, within GFF1808 at 472.287 kb on + strand at 472.287 kb on + strand at 472.287 kb on + strand at 472.288 kb on - strand at 472.288 kb on - strand at 472.302 kb on + strand at 472.302 kb on + strand at 472.302 kb on + strand at 472.302 kb on + strand at 472.303 kb on - strand at 472.303 kb on - strand at 472.303 kb on - strand at 472.303 kb on - strand at 472.320 kb on + strand at 472.320 kb on + strand at 472.320 kb on + strand at 472.320 kb on + strand at 472.320 kb on + strand at 472.320 kb on + strand at 472.321 kb on - strand at 472.321 kb on - strand at 472.321 kb on - strand at 472.321 kb on - strand at 472.321 kb on - strand at 472.324 kb on + strand at 472.324 kb on + strand at 472.324 kb on + strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.388 kb on + strand at 472.388 kb on + strand at 472.388 kb on + strand at 472.388 kb on + strand at 472.389 kb on - strand at 472.392 kb on + strand at 472.393 kb on - strand at 472.494 kb on - strand, within GFF1809 at 472.609 kb on - strand at 472.626 kb on + strand at 472.676 kb on + strand at 472.677 kb on - strand at 472.677 kb on - strand at 472.677 kb on - strand at 472.677 kb on - strand at 472.680 kb on + strand at 472.680 kb on + strand at 472.681 kb on - strand at 472.681 kb on - strand at 472.707 kb on + strand at 472.707 kb on + strand at 472.732 kb on + strand at 472.741 kb on + strand at 472.760 kb on - strand at 472.760 kb on - strand at 472.766 kb on + strand at 472.766 kb on + strand at 472.766 kb on + strand at 472.766 kb on + strand at 472.766 kb on + strand at 472.886 kb on + strand at 472.886 kb on + strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.887 kb on - strand at 472.922 kb on + strand at 472.922 kb on + strand at 472.922 kb on + strand at 472.923 kb on - strand at 472.923 kb on - strand at 472.923 kb on - strand at 472.923 kb on - strand at 472.923 kb on - strand at 472.940 kb on + strand at 472.940 kb on + strand at 472.940 kb on + strand at 472.940 kb on + strand at 472.941 kb on - strand at 472.941 kb on - strand at 472.941 kb on - strand at 472.941 kb on - strand at 472.941 kb on - strand at 472.941 kb on - strand at 472.941 kb on - strand at 473.072 kb on + strand, within GFF1810 at 473.072 kb on + strand, within GFF1810 at 473.072 kb on + strand, within GFF1810 at 473.072 kb on + strand, within GFF1810 at 473.072 kb on + strand, within GFF1810 at 473.073 kb on - strand, within GFF1810 at 473.073 kb on - strand, within GFF1810 at 473.073 kb on - strand, within GFF1810 at 473.073 kb on - strand, within GFF1810 at 473.073 kb on - strand, within GFF1810 at 473.073 kb on - strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.099 kb on + strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.100 kb on - strand, within GFF1810 at 473.114 kb on + strand, within GFF1810 at 473.114 kb on + strand, within GFF1810 at 473.161 kb on + strand, within GFF1810 at 473.162 kb on - strand, within GFF1810 at 473.162 kb on - strand, within GFF1810 at 473.192 kb on + strand, within GFF1810 at 473.192 kb on + strand, within GFF1810 at 473.192 kb on + strand, within GFF1810 at 473.192 kb on + strand, within GFF1810
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 470,898 + -0.1 470,898 + -0.1 470,898 + -0.2 470,898 + +2.0 470,898 + -0.2 470,898 + -1.6 470,898 + -0.8 470,898 + -0.5 470,899 - -1.0 470,899 - -1.1 470,899 - -0.1 470,899 - -0.2 470,899 - -1.5 470,899 - -1.6 470,972 + -0.6 470,972 + +0.3 470,972 + -0.0 470,972 + -0.8 470,972 + -0.5 470,973 - -0.3 470,973 - +0.4 470,988 + -0.3 470,988 + -0.5 470,989 - -0.8 471,105 + +0.2 471,105 + +1.1 471,106 - -0.1 471,107 + -0.2 471,107 + -0.6 471,108 - +0.1 471,108 - -1.3 471,149 - -0.6 471,149 - -0.0 471,157 + +0.0 471,157 + -0.7 471,158 - -0.4 471,158 - -1.2 471,158 - -0.1 471,158 - +0.2 471,158 - -0.4 471,158 - +0.3 471,163 + -0.5 471,164 - -0.3 471,164 - -0.2 471,267 + +0.4 471,267 + -0.4 471,319 + +0.0 471,319 + -1.7 471,319 + +0.1 471,319 + +0.1 471,319 + -1.2 471,319 + +0.6 471,319 + -0.8 471,319 + -0.5 471,319 + -0.5 471,319 + -0.1 471,319 + -0.9 471,319 + -0.8 471,319 + +1.1 471,319 + -0.8 471,319 + -0.3 471,320 - -1.1 471,320 - -1.7 471,320 - -0.3 471,320 - -0.8 471,320 - -0.4 471,320 - -3.0 471,320 - -0.3 471,320 - -0.4 471,320 - -0.2 471,320 - -0.0 471,320 - +0.1 471,320 - +0.3 471,320 - +0.7 471,320 - +0.4 471,320 - -0.6 471,435 + -0.9 471,435 + -0.6 471,436 - -1.0 471,436 - -0.1 471,436 - -0.0 471,495 + -0.9 471,495 + -2.9 471,495 + -0.8 471,495 + -1.5 471,496 - +0.3 471,739 + -1.0 471,739 + +0.5 471,740 - -0.2 471,772 - +0.9 471,772 - +1.1 471,810 + -0.9 471,810 + -0.7 471,810 + -0.1 471,810 + -0.7 471,810 + -0.9 471,810 + -1.4 471,811 - -0.1 471,811 - -0.4 471,811 - +0.4 471,811 - +0.9 471,811 - +0.6 471,811 - -0.4 471,811 - +0.6 471,827 + -0.6 471,828 - +0.1 471,828 - -1.4 471,828 - -0.7 471,889 + -0.7 471,889 + -0.7 471,889 + -1.3 471,889 + -0.3 471,889 + -0.6 471,890 - +0.2 471,890 - +0.9 471,890 - +0.6 471,890 - +0.3 471,908 + -1.7 471,908 + +0.8 471,908 + -0.0 471,908 - +1.1 471,909 - +0.2 471,909 - +0.3 471,966 + GFF1808 0.25 -0.5 471,966 + GFF1808 0.25 +1.5 471,966 + GFF1808 0.25 +0.5 471,966 + GFF1808 0.25 +0.4 471,967 - GFF1808 0.26 +0.2 471,967 - GFF1808 0.26 +1.2 471,967 - GFF1808 0.26 -0.7 471,967 - GFF1808 0.26 +0.2 472,031 + GFF1808 0.47 +1.8 472,032 - GFF1808 0.47 +0.3 472,056 - GFF1808 0.55 -0.3 472,100 - GFF1808 0.69 -0.2 472,287 + -2.0 472,287 + -0.1 472,287 + +0.0 472,288 - -0.3 472,288 - -0.3 472,302 + +0.3 472,302 + +0.2 472,302 + -0.8 472,302 + -1.1 472,303 - -0.6 472,303 - +0.4 472,303 - -0.1 472,303 - -1.0 472,320 + -0.0 472,320 + -0.1 472,320 + +0.6 472,320 + -0.5 472,320 + -1.4 472,320 + -0.5 472,321 - -0.9 472,321 - +0.3 472,321 - -1.3 472,321 - -0.5 472,321 - +0.8 472,324 + +0.1 472,324 + +1.5 472,324 + -0.2 472,325 - -0.8 472,325 - -2.1 472,325 - -1.3 472,325 - -0.0 472,388 + -0.2 472,388 + +0.0 472,388 + -1.1 472,388 + +1.2 472,389 - +0.2 472,392 + -0.2 472,393 - +0.3 472,494 - GFF1809 0.48 -1.5 472,609 - -0.2 472,626 + -0.6 472,676 + -1.9 472,677 - -0.4 472,677 - -1.0 472,677 - -0.7 472,677 - -0.1 472,680 + +0.6 472,680 + +0.1 472,681 - -2.2 472,681 - -1.4 472,707 + +1.4 472,707 + -2.1 472,732 + -0.1 472,741 + -0.2 472,760 - -0.2 472,760 - -0.0 472,766 + +0.5 472,766 + -1.2 472,766 + -0.5 472,766 + -0.7 472,766 + +0.6 472,886 + +0.8 472,886 + -1.0 472,887 - +0.3 472,887 - +0.2 472,887 - -0.3 472,887 - +0.7 472,887 - -0.2 472,887 - +0.2 472,887 - -1.5 472,887 - -0.3 472,887 - -2.5 472,887 - -1.2 472,922 + +0.2 472,922 + -0.5 472,922 + -0.3 472,923 - +0.0 472,923 - -0.5 472,923 - -0.9 472,923 - -0.8 472,923 - +0.3 472,940 + -0.8 472,940 + +0.3 472,940 + -0.4 472,940 + +0.4 472,941 - +0.6 472,941 - -0.3 472,941 - -0.0 472,941 - -1.0 472,941 - +0.8 472,941 - +0.8 472,941 - -1.9 473,072 + GFF1810 0.11 -0.2 473,072 + GFF1810 0.11 +1.5 473,072 + GFF1810 0.11 -0.5 473,072 + GFF1810 0.11 +0.1 473,072 + GFF1810 0.11 -0.1 473,073 - GFF1810 0.11 +0.8 473,073 - GFF1810 0.11 +1.5 473,073 - GFF1810 0.11 -0.7 473,073 - GFF1810 0.11 -0.3 473,073 - GFF1810 0.11 -0.5 473,073 - GFF1810 0.11 -3.7 473,099 + GFF1810 0.13 -1.7 473,099 + GFF1810 0.13 -1.8 473,099 + GFF1810 0.13 +0.1 473,099 + GFF1810 0.13 +0.6 473,099 + GFF1810 0.13 -1.5 473,099 + GFF1810 0.13 -0.6 473,099 + GFF1810 0.13 +1.8 473,099 + GFF1810 0.13 +0.1 473,099 + GFF1810 0.13 +0.8 473,099 + GFF1810 0.13 +0.7 473,100 - GFF1810 0.13 -0.5 473,100 - GFF1810 0.13 -1.5 473,100 - GFF1810 0.13 +0.2 473,100 - GFF1810 0.13 -0.2 473,100 - GFF1810 0.13 +0.2 473,100 - GFF1810 0.13 -0.5 473,100 - GFF1810 0.13 -0.0 473,100 - GFF1810 0.13 +2.0 473,100 - GFF1810 0.13 -0.2 473,100 - GFF1810 0.13 +0.8 473,100 - GFF1810 0.13 -0.6 473,100 - GFF1810 0.13 -1.1 473,100 - GFF1810 0.13 -0.2 473,114 + GFF1810 0.14 -0.4 473,114 + GFF1810 0.14 +0.2 473,161 + GFF1810 0.16 -0.5 473,162 - GFF1810 0.16 -0.1 473,162 - GFF1810 0.16 -0.4 473,192 + GFF1810 0.18 +0.2 473,192 + GFF1810 0.18 -0.3 473,192 + GFF1810 0.18 +0.8 473,192 + GFF1810 0.18 -1.7
Or see this region's nucleotide sequence