Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1686 and GFF1687 overlap by 4 nucleotides GFF1687 and GFF1688 are separated by 19 nucleotides GFF1688 and GFF1689 are separated by 39 nucleotides
GFF1686 - Uncharacterized protein Bsu YraM, at 330,647 to 331,819
GFF1686
GFF1687 - BUG/TctC family periplasmic protein, at 331,816 to 332,793
GFF1687
GFF1688 - FIG00828468: hypothetical protein, at 332,813 to 334,240
GFF1688
GFF1689 - BUG/TctC family periplasmic protein, at 334,280 to 335,272
GFF1689
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 331.872 kb on + strand at 331.969 kb on + strand, within GFF1687 at 331.969 kb on + strand, within GFF1687 at 331.970 kb on - strand, within GFF1687 at 332.131 kb on + strand, within GFF1687 at 332.255 kb on - strand, within GFF1687 at 332.372 kb on - strand, within GFF1687 at 332.372 kb on - strand, within GFF1687 at 333.122 kb on + strand, within GFF1688 at 333.123 kb on - strand, within GFF1688 at 333.240 kb on - strand, within GFF1688 at 333.434 kb on + strand, within GFF1688 at 333.488 kb on + strand, within GFF1688 at 333.489 kb on - strand, within GFF1688 at 333.515 kb on + strand, within GFF1688 at 333.515 kb on + strand, within GFF1688 at 333.656 kb on + strand, within GFF1688 at 333.774 kb on - strand, within GFF1688 at 333.839 kb on + strand, within GFF1688 at 333.839 kb on + strand, within GFF1688 at 333.839 kb on + strand, within GFF1688 at 334.101 kb on - strand at 334.101 kb on - strand at 334.538 kb on + strand, within GFF1689 at 334.565 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.628 kb on + strand, within GFF1689 at 334.828 kb on - strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 331,872 + +0.0 331,969 + GFF1687 0.16 +0.1 331,969 + GFF1687 0.16 +1.1 331,970 - GFF1687 0.16 -0.9 332,131 + GFF1687 0.32 +1.5 332,255 - GFF1687 0.45 +0.1 332,372 - GFF1687 0.57 +0.0 332,372 - GFF1687 0.57 -0.3 333,122 + GFF1688 0.22 +3.8 333,123 - GFF1688 0.22 -1.8 333,240 - GFF1688 0.30 -0.1 333,434 + GFF1688 0.43 +1.2 333,488 + GFF1688 0.47 -0.7 333,489 - GFF1688 0.47 -2.1 333,515 + GFF1688 0.49 -0.5 333,515 + GFF1688 0.49 -0.3 333,656 + GFF1688 0.59 +0.4 333,774 - GFF1688 0.67 -0.7 333,839 + GFF1688 0.72 -1.9 333,839 + GFF1688 0.72 -1.2 333,839 + GFF1688 0.72 -0.8 334,101 - +0.1 334,101 - -1.9 334,538 + GFF1689 0.26 -0.8 334,565 + GFF1689 0.29 +0.5 334,567 + GFF1689 0.29 +1.2 334,567 + GFF1689 0.29 +0.8 334,567 + GFF1689 0.29 -0.0 334,567 + GFF1689 0.29 -3.0 334,567 + GFF1689 0.29 +1.2 334,567 + GFF1689 0.29 +0.2 334,567 + GFF1689 0.29 -2.0 334,567 + GFF1689 0.29 +1.0 334,567 + GFF1689 0.29 -2.1 334,567 + GFF1689 0.29 -1.2 334,567 + GFF1689 0.29 -1.2 334,567 + GFF1689 0.29 +0.5 334,567 + GFF1689 0.29 -0.5 334,567 + GFF1689 0.29 -1.0 334,567 + GFF1689 0.29 -0.6 334,567 + GFF1689 0.29 -0.6 334,567 + GFF1689 0.29 +0.2 334,567 + GFF1689 0.29 -0.0 334,567 + GFF1689 0.29 -0.5 334,567 + GFF1689 0.29 +0.6 334,567 + GFF1689 0.29 -0.2 334,568 - GFF1689 0.29 -0.2 334,568 - GFF1689 0.29 -3.1 334,568 - GFF1689 0.29 +0.8 334,568 - GFF1689 0.29 +0.2 334,568 - GFF1689 0.29 +0.1 334,568 - GFF1689 0.29 +1.3 334,568 - GFF1689 0.29 -0.5 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 +1.5 334,568 - GFF1689 0.29 +0.5 334,568 - GFF1689 0.29 +0.2 334,568 - GFF1689 0.29 -0.8 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 +0.8 334,568 - GFF1689 0.29 +0.4 334,568 - GFF1689 0.29 -0.5 334,568 - GFF1689 0.29 -0.9 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 +0.6 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 -1.0 334,568 - GFF1689 0.29 +1.3 334,568 - GFF1689 0.29 +0.1 334,568 - GFF1689 0.29 -0.1 334,628 + GFF1689 0.35 -0.7 334,828 - GFF1689 0.55 -0.9 334,847 + GFF1689 0.57 -1.8 334,847 + GFF1689 0.57 -2.0 334,847 + GFF1689 0.57 +0.1 334,848 - GFF1689 0.57 -0.4 334,848 - GFF1689 0.57 +1.4 334,848 - GFF1689 0.57 -1.0 334,848 - GFF1689 0.57 -0.2 334,848 - GFF1689 0.57 +1.4 334,848 - GFF1689 0.57 -2.1
Or see this region's nucleotide sequence