Strain Fitness in Variovorax sp. SCN45 around GFF115

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
142,698	+				-0.9
142,698	+				-0.3
142,698	+				+0.2
142,698	+				+0.2
142,699	-				-1.1
142,699	-				-1.4
142,699	-				-2.6
142,699	-				+0.5
142,699	-				+0.4
142,699	-				-0.0
142,699	-				-0.9
142,808	+		GFF114	0.12	-0.1
142,808	+		GFF114	0.12	-0.9
142,809	-		GFF114	0.12	+0.4
142,940	+		GFF114	0.32	-0.1
142,940	+		GFF114	0.32	-0.4
142,940	+		GFF114	0.32	+0.5
142,940	+		GFF114	0.32	+0.7
142,940	+		GFF114	0.32	-0.9
142,941	-		GFF114	0.32	-0.3
142,941	-		GFF114	0.32	+0.1
143,174	+		GFF114	0.67	-0.8
143,174	+		GFF114	0.67	-0.1
143,225	+		GFF114	0.75	-1.7
143,225	+		GFF114	0.75	-1.9
143,225	+		GFF114	0.75	+0.7
143,225	+		GFF114	0.75	-0.3
143,225	+		GFF114	0.75	+1.0
143,225	+		GFF114	0.75	+0.3
143,225	+		GFF114	0.75	-0.4
143,226	-		GFF114	0.75	-0.1
143,226	-		GFF114	0.75	-1.0
143,226	-		GFF114	0.75	-0.6
143,463	+		GFF115	0.11	-0.7
143,463	+		GFF115	0.11	+0.2
143,464	-		GFF115	0.11	+0.3
143,464	-		GFF115	0.11	-0.2
143,464	-		GFF115	0.11	-0.9
143,484	+		GFF115	0.14	-1.7
143,484	+		GFF115	0.14	-1.0
143,485	-		GFF115	0.14	+0.2
143,485	-		GFF115	0.14	+0.7
143,732	+		GFF115	0.51	-0.7
143,745	+		GFF115	0.53	-1.3
143,745	+		GFF115	0.53	+0.2
143,745	+		GFF115	0.53	-0.8
143,746	-		GFF115	0.53	-0.2
143,746	-		GFF115	0.53	-0.2
143,746	-		GFF115	0.53	+0.2
143,827	-		GFF115	0.66	+1.1
143,827	-		GFF115	0.66	-0.7
143,877	+		GFF115	0.73	+0.5
143,877	+		GFF115	0.73	+0.3
143,877	+		GFF115	0.73	+1.3
143,877	+		GFF115	0.73	+0.4
143,877	+		GFF115	0.73	-0.2
143,877	+		GFF115	0.73	+0.3
143,877	+		GFF115	0.73	+0.2
143,878	-		GFF115	0.73	+0.1
143,878	-		GFF115	0.73	-1.7
143,878	-		GFF115	0.73	+1.3
143,878	-		GFF115	0.73	-0.2
143,977	-		GFF115	0.88	+1.0
143,977	-		GFF115	0.88	-1.3
144,019	-				-0.5
144,048	+				-1.1
144,048	+				+0.1
144,333	+		GFF116	0.53	+0.3
144,333	+		GFF116	0.53	-0.9
144,417	+		GFF116	0.70	+0.1
144,417	+		GFF116	0.70	-1.1
144,417	+		GFF116	0.70	+1.2
144,417	+		GFF116	0.70	+0.4
144,417	+		GFF116	0.70	+0.3
144,418	-		GFF116	0.70	-0.9
144,418	-		GFF116	0.70	-1.3
144,418	-		GFF116	0.70	-0.7
144,418	-		GFF116	0.70	-0.7
144,418	-		GFF116	0.70	-0.2
144,685	+				-2.8
144,685	+				+0.5
144,685	+				-0.4
144,685	+				+0.4
144,685	+				+0.9
144,685	+				-0.4
144,685	+				-0.2
144,686	-				-1.4
144,686	-				-0.5
144,686	-				-1.1
144,686	-				-0.1
144,686	-				+0.0
144,686	-				-0.3
144,686	-				+1.3
144,686	-				+0.1
144,712	-				-0.2
144,872	-		GFF117	0.14	-0.3