Strain Fitness in Variovorax sp. SCN45 around GFF821

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF819 and GFF820 overlap by 4 nucleotidesGFF820 and GFF821 are separated by 203 nucleotidesGFF821 and GFF822 are separated by 127 nucleotides GFF819 - Uncharacterized protein CC_2099, at 124,407 to 124,952 GFF819 GFF820 - Intracellular protease, at 124,949 to 125,596 GFF820 GFF821 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 125,800 to 126,537 GFF821 GFF822 - Na+/H+-dicarboxylate symporter, at 126,665 to 128,008 GFF822 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1at 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 125.022 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.043 kb on + strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.597 kb on - strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.648 kb on - strandat 125.648 kb on - strandat 125.661 kb on + strandat 125.661 kb on + strandat 125.662 kb on - strandat 125.662 kb on - strandat 125.662 kb on - strandat 125.730 kb on + strandat 125.750 kb on - strandat 125.750 kb on - strandat 125.779 kb on + strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.782 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.787 kb on + strandat 125.787 kb on + strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.917 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.253 kb on + strand, within GFF821at 126.254 kb on - strand, within GFF821at 126.254 kb on - strand, within GFF821at 126.350 kb on - strand, within GFF821at 126.487 kb on + strandat 126.627 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.637 kb on + strandat 126.638 kb on - strandat 126.638 kb on - strandat 126.665 kb on + strandat 126.707 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.719 kb on + strandat 126.720 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.771 kb on - strandat 126.929 kb on + strand, within GFF822at 126.929 kb on + strand, within GFF822at 126.929 kb on + strand, within GFF822at 126.929 kb on + strand, within GFF822at 127.049 kb on + strand, within GFF822at 127.049 kb on + strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.050 kb on - strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.374 kb on + strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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124,987 - +0.5
124,987 - -0.3
124,987 - +0.5
124,987 - +1.2
125,022 + GFF820 0.11 +1.0
125,040 + GFF820 0.14 -0.7
125,040 + GFF820 0.14 +0.3
125,041 - GFF820 0.14 +0.2
125,041 - GFF820 0.14 -0.3
125,041 - GFF820 0.14 +0.2
125,043 + GFF820 0.15 +0.4
125,044 - GFF820 0.15 -0.7
125,044 - GFF820 0.15 +0.4
125,044 - GFF820 0.15 -0.1
125,394 + GFF820 0.69 +0.6
125,394 + GFF820 0.69 -0.7
125,394 + GFF820 0.69 -0.8
125,394 + GFF820 0.69 +0.2
125,394 + GFF820 0.69 +0.0
125,394 + GFF820 0.69 -0.5
125,395 - GFF820 0.69 -0.3
125,395 - GFF820 0.69 +0.3
125,395 - GFF820 0.69 +0.4
125,597 - -0.3
125,647 + -0.1
125,647 + -0.2
125,647 + -0.3
125,647 + -0.8
125,647 + +0.7
125,647 + -0.0
125,648 - +0.0
125,648 - -0.8
125,661 + +0.5
125,661 + +0.5
125,662 - +0.9
125,662 - -2.6
125,662 - +0.4
125,730 + -0.9
125,750 - -0.5
125,750 - -0.9
125,779 + -0.9
125,780 - -2.6
125,780 - -0.5
125,780 - -0.8
125,782 + -2.2
125,783 + -1.3
125,783 + -0.8
125,783 + +1.0
125,783 + -1.1
125,783 + +0.0
125,783 + +0.8
125,783 + +0.1
125,784 - +0.7
125,784 - -1.5
125,784 - -0.6
125,784 - +0.5
125,784 - -0.5
125,784 - -0.5
125,784 - -0.3
125,787 + +0.6
125,787 + +1.1
125,788 - -0.9
125,788 - -0.2
125,788 - -1.6
125,818 + -1.5
125,818 + -1.9
125,818 + +1.3
125,818 + -1.4
125,818 + -0.8
125,818 + -0.5
125,818 + +1.5
125,818 + -0.8
125,818 + -0.8
125,818 + -1.5
125,819 - -2.6
125,819 - -1.1
125,819 - -2.3
125,819 - +0.5
125,819 - -1.5
125,917 + GFF821 0.16 +0.5
126,253 + GFF821 0.61 -0.5
126,253 + GFF821 0.61 -0.5
126,253 + GFF821 0.61 -0.8
126,254 - GFF821 0.62 -2.1
126,254 - GFF821 0.62 -1.1
126,350 - GFF821 0.75 +0.1
126,487 + -2.8
126,627 + -0.2
126,637 + +0.0
126,637 + -0.5
126,637 + -0.4
126,637 + -1.1
126,637 + -0.5
126,637 + +0.1
126,638 - -0.6
126,638 - +0.1
126,665 + +0.1
126,707 + +0.1
126,719 + +0.9
126,719 + -0.1
126,719 + -2.3
126,719 + +1.5
126,719 + -0.7
126,719 + -0.3
126,720 - +1.5
126,771 - -0.0
126,771 - -0.2
126,771 - -0.9
126,771 - -0.6
126,771 - +0.2
126,929 + GFF822 0.20 -0.7
126,929 + GFF822 0.20 -1.8
126,929 + GFF822 0.20 -1.5
126,929 + GFF822 0.20 -0.4
127,049 + GFF822 0.29 +0.5
127,049 + GFF822 0.29 -0.8
127,050 - GFF822 0.29 +0.1
127,050 - GFF822 0.29 +0.2
127,050 - GFF822 0.29 +0.1
127,050 - GFF822 0.29 +1.0
127,050 - GFF822 0.29 -0.4
127,262 + GFF822 0.44 -0.1
127,262 + GFF822 0.44 +0.1
127,262 + GFF822 0.44 -1.3
127,262 + GFF822 0.44 -1.6
127,262 + GFF822 0.44 -0.1
127,262 + GFF822 0.44 -1.0
127,262 + GFF822 0.44 -0.7
127,262 + GFF822 0.44 -0.8
127,262 + GFF822 0.44 +0.5
127,262 + GFF822 0.44 +1.1
127,262 + GFF822 0.44 -0.4
127,263 - GFF822 0.44 +0.3
127,263 - GFF822 0.44 +0.7
127,263 - GFF822 0.44 -0.1
127,263 - GFF822 0.44 -0.2
127,263 - GFF822 0.44 -1.0
127,263 - GFF822 0.44 -1.1
127,263 - GFF822 0.44 -0.5
127,263 - GFF822 0.44 -0.5
127,263 - GFF822 0.44 +0.0
127,263 - GFF822 0.44 -0.8
127,370 + GFF822 0.52 -0.5
127,370 + GFF822 0.52 +0.6
127,370 + GFF822 0.52 -1.1
127,370 + GFF822 0.52 -0.0
127,371 - GFF822 0.53 -0.2
127,371 - GFF822 0.53 +0.4
127,371 - GFF822 0.53 -0.6
127,371 - GFF822 0.53 -0.1
127,371 - GFF822 0.53 -0.5
127,371 - GFF822 0.53 -0.9
127,374 + GFF822 0.53 -0.4
127,455 - GFF822 0.59 -0.2
127,455 - GFF822 0.59 -2.3
127,455 - GFF822 0.59 +0.9
127,455 - GFF822 0.59 -0.2
127,455 - GFF822 0.59 -1.4
127,455 - GFF822 0.59 +1.3

Or see this region's nucleotide sequence