Strain Fitness in Variovorax sp. SCN45 around GFF819

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF818 and GFF819 are separated by 4 nucleotidesGFF819 and GFF820 overlap by 4 nucleotidesGFF820 and GFF821 are separated by 203 nucleotides GFF818 - BUG/TctC family periplasmic protein, at 123,392 to 124,402 GFF818 GFF819 - Uncharacterized protein CC_2099, at 124,407 to 124,952 GFF819 GFF820 - Intracellular protease, at 124,949 to 125,596 GFF820 GFF821 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 125,800 to 126,537 GFF821 Position (kb) 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 123.530 kb on + strand, within GFF818at 123.530 kb on + strand, within GFF818at 123.530 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.681 kb on - strand, within GFF818at 123.681 kb on - strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.729 kb on - strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.744 kb on - strand, within GFF818at 123.744 kb on - strand, within GFF818at 123.767 kb on + strand, within GFF818at 123.767 kb on + strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.833 kb on + strand, within GFF818at 123.834 kb on - strand, within GFF818at 123.834 kb on - strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.968 kb on + strand, within GFF818at 123.969 kb on - strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.585 kb on + strand, within GFF819at 124.756 kb on + strand, within GFF819at 124.757 kb on - strand, within GFF819at 124.757 kb on - strand, within GFF819at 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 125.022 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.043 kb on + strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.597 kb on - strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.648 kb on - strandat 125.648 kb on - strandat 125.661 kb on + strandat 125.661 kb on + strandat 125.662 kb on - strandat 125.662 kb on - strandat 125.662 kb on - strandat 125.730 kb on + strandat 125.750 kb on - strandat 125.750 kb on - strandat 125.779 kb on + strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.780 kb on - strandat 125.782 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.783 kb on + strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.784 kb on - strandat 125.787 kb on + strandat 125.787 kb on + strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.788 kb on - strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.818 kb on + strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.819 kb on - strandat 125.917 kb on + strand, within GFF821

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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123,530 + GFF818 0.14 +0.1
123,530 + GFF818 0.14 +0.1
123,530 + GFF818 0.14 -0.2
123,680 + GFF818 0.28 -0.8
123,680 + GFF818 0.28 -0.1
123,680 + GFF818 0.28 +0.3
123,680 + GFF818 0.28 -0.8
123,681 - GFF818 0.29 -0.5
123,681 - GFF818 0.29 +0.9
123,728 + GFF818 0.33 +0.4
123,728 + GFF818 0.33 +0.4
123,728 + GFF818 0.33 -0.6
123,729 - GFF818 0.33 -0.1
123,743 + GFF818 0.35 +0.0
123,743 + GFF818 0.35 -0.6
123,743 + GFF818 0.35 -0.5
123,743 + GFF818 0.35 -0.7
123,744 - GFF818 0.35 +0.5
123,744 - GFF818 0.35 +0.2
123,767 + GFF818 0.37 -1.5
123,767 + GFF818 0.37 -0.8
123,768 - GFF818 0.37 +0.3
123,768 - GFF818 0.37 -1.8
123,768 - GFF818 0.37 -1.1
123,768 - GFF818 0.37 +0.6
123,833 + GFF818 0.44 +0.8
123,834 - GFF818 0.44 +0.5
123,834 - GFF818 0.44 +0.3
123,851 + GFF818 0.45 +1.5
123,851 + GFF818 0.45 -0.2
123,851 + GFF818 0.45 -0.5
123,851 + GFF818 0.45 +0.7
123,852 - GFF818 0.45 +1.5
123,852 - GFF818 0.45 +0.5
123,852 - GFF818 0.45 +0.5
123,852 - GFF818 0.45 -0.5
123,852 - GFF818 0.45 -0.9
123,852 - GFF818 0.45 +0.2
123,852 - GFF818 0.45 -0.9
123,852 - GFF818 0.45 -0.2
123,852 - GFF818 0.45 +1.3
123,852 - GFF818 0.45 -0.8
123,968 + GFF818 0.57 +0.0
123,969 - GFF818 0.57 -0.7
124,184 + GFF818 0.78 -0.2
124,184 + GFF818 0.78 +0.3
124,184 + GFF818 0.78 +0.1
124,184 + GFF818 0.78 -1.8
124,184 + GFF818 0.78 -0.7
124,184 + GFF818 0.78 -0.4
124,184 + GFF818 0.78 +0.0
124,184 + GFF818 0.78 -0.2
124,184 + GFF818 0.78 -0.7
124,184 + GFF818 0.78 -0.9
124,184 + GFF818 0.78 -0.2
124,185 - GFF818 0.78 -0.1
124,185 - GFF818 0.78 -0.3
124,185 - GFF818 0.78 -0.0
124,185 - GFF818 0.78 +0.5
124,185 - GFF818 0.78 +1.8
124,185 - GFF818 0.78 -1.2
124,185 - GFF818 0.78 -0.4
124,185 - GFF818 0.78 -0.8
124,185 - GFF818 0.78 -0.2
124,185 - GFF818 0.78 -0.1
124,185 - GFF818 0.78 -1.5
124,185 - GFF818 0.78 -0.1
124,585 + GFF819 0.33 -2.1
124,756 + GFF819 0.64 -0.9
124,757 - GFF819 0.64 -1.6
124,757 - GFF819 0.64 +1.5
124,987 - +0.5
124,987 - -0.3
124,987 - +0.5
124,987 - +1.2
125,022 + GFF820 0.11 +1.0
125,040 + GFF820 0.14 -0.7
125,040 + GFF820 0.14 +0.3
125,041 - GFF820 0.14 +0.2
125,041 - GFF820 0.14 -0.3
125,041 - GFF820 0.14 +0.2
125,043 + GFF820 0.15 +0.4
125,044 - GFF820 0.15 -0.7
125,044 - GFF820 0.15 +0.4
125,044 - GFF820 0.15 -0.1
125,394 + GFF820 0.69 +0.6
125,394 + GFF820 0.69 -0.7
125,394 + GFF820 0.69 -0.8
125,394 + GFF820 0.69 +0.2
125,394 + GFF820 0.69 +0.0
125,394 + GFF820 0.69 -0.5
125,395 - GFF820 0.69 -0.3
125,395 - GFF820 0.69 +0.3
125,395 - GFF820 0.69 +0.4
125,597 - -0.3
125,647 + -0.1
125,647 + -0.2
125,647 + -0.3
125,647 + -0.8
125,647 + +0.7
125,647 + -0.0
125,648 - +0.0
125,648 - -0.8
125,661 + +0.5
125,661 + +0.5
125,662 - +0.9
125,662 - -2.6
125,662 - +0.4
125,730 + -0.9
125,750 - -0.5
125,750 - -0.9
125,779 + -0.9
125,780 - -2.6
125,780 - -0.5
125,780 - -0.8
125,782 + -2.2
125,783 + -1.3
125,783 + -0.8
125,783 + +1.0
125,783 + -1.1
125,783 + +0.0
125,783 + +0.8
125,783 + +0.1
125,784 - +0.7
125,784 - -1.5
125,784 - -0.6
125,784 - +0.5
125,784 - -0.5
125,784 - -0.5
125,784 - -0.3
125,787 + +0.6
125,787 + +1.1
125,788 - -0.9
125,788 - -0.2
125,788 - -1.6
125,818 + -1.5
125,818 + -1.9
125,818 + +1.3
125,818 + -1.4
125,818 + -0.8
125,818 + -0.5
125,818 + +1.5
125,818 + -0.8
125,818 + -0.8
125,818 + -1.5
125,819 - -2.6
125,819 - -1.1
125,819 - -2.3
125,819 - +0.5
125,819 - -1.5
125,917 + GFF821 0.16 +0.5

Or see this region's nucleotide sequence