Strain Fitness in Variovorax sp. SCN45 around GFF773

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
46,976	+		GFF772	0.83	+0.5
46,986	-		GFF772	0.83	-0.3
46,986	-		GFF772	0.83	-0.1
46,986	-		GFF772	0.83	+0.3
47,066	+		GFF772	0.84	-0.5
47,066	+		GFF772	0.84	-0.3
47,067	-		GFF772	0.84	-0.1
47,067	-		GFF772	0.84	-0.8
47,067	-		GFF772	0.84	-1.2
47,067	-		GFF772	0.84	+0.6
47,129	+		GFF772	0.85	-1.0
47,130	-		GFF772	0.85	+0.0
47,270	+		GFF772	0.88	+0.6
47,270	+		GFF772	0.88	+1.1
47,270	+		GFF772	0.88	+0.7
47,271	-		GFF772	0.88	-0.2
47,271	-		GFF772	0.88	+0.5
47,298	-		GFF772	0.89	-0.2
47,361	-		GFF772	0.90	-1.0
47,411	-				-1.6
47,854	+				-0.7
47,854	+				+0.9
47,855	-				-0.3
47,876	-				+0.1
47,876	-				-0.1
47,876	-				+0.4
47,876	-				-0.4
48,054	+		GFF773	0.34	-1.4
48,055	-		GFF773	0.34	-0.8
48,267	+				-0.9
48,267	+				-0.8
48,267	+				+1.1
48,267	+				-0.2
48,267	+				-0.0
48,267	+				-2.2
48,267	+				-2.3
48,267	+				-0.3
48,267	+				+0.7
48,267	+				-0.4
48,268	-				-0.2
48,268	-				-0.6
48,268	-				-0.7
48,268	-				-1.3
48,268	-				-0.6
48,268	-				-0.9
48,271	+				+0.0
48,271	+				-1.8
48,272	-				-0.3
48,272	-				-0.8
48,378	+		GFF774	0.37	-1.1
48,379	-		GFF774	0.37	-0.5
48,379	-		GFF774	0.37	-0.2
48,379	-		GFF774	0.37	-0.2
48,379	-		GFF774	0.37	+0.0
48,379	-		GFF774	0.37	-0.4
48,459	+		GFF774	0.76	-0.5
48,459	+		GFF774	0.76	+0.4
48,459	+		GFF774	0.76	+0.5
48,460	-		GFF774	0.76	-1.2
48,460	-		GFF774	0.76	-0.0
48,460	-		GFF774	0.76	-1.6
48,460	-		GFF774	0.76	+0.1
48,460	-		GFF774	0.76	-0.4
48,460	-		GFF774	0.76	-1.5
48,460	-		GFF774	0.76	-0.1
48,545	-				-0.6
48,545	-				-1.3
48,581	+				+0.1
48,581	+				-0.1
48,581	+				-2.4
48,582	-				+0.9
48,582	-				+0.0
48,582	-				+0.5
48,582	-				+0.9
48,582	-				+0.3
48,582	-				+1.7
48,582	-				-1.2
48,582	-				-1.5
48,656	+		GFF775	0.18	-0.5
48,657	-		GFF775	0.18	-0.2
48,657	-		GFF775	0.18	+0.5
48,657	-		GFF775	0.18	-0.3
48,657	-		GFF775	0.18	+3.1
48,657	-		GFF775	0.18	-1.5
48,788	+		GFF775	0.67	-0.6
48,926	-				-0.4
48,929	+				-1.1
48,929	+				-1.5
48,930	-				-0.2
48,957	-				-0.2
48,957	-				-1.6
48,963	+				-0.4
48,963	+				-1.3
48,963	+				-0.3
48,963	+				-0.6
48,964	-				-0.4
48,964	-				+1.5
48,964	-				-0.1
48,964	-				-0.1
48,967	+				+0.5
48,967	+				-0.2
48,967	+				+0.8
48,967	+				-0.1
48,968	-				+0.2
48,968	-				-0.5
48,968	-				+1.5
48,968	-				+1.1
48,968	-				+0.5
48,968	-				-1.5
48,968	-				-0.6
48,970	+				+0.3
48,971	-				+0.4
49,025	+				-0.8
49,025	+				+0.4
49,025	+				+1.1
49,025	+				+0.7
49,025	+				-0.1
49,026	-				+0.0
49,026	-				-0.1
49,026	-				+0.5
49,046	+				+1.0
49,047	-				-0.7
49,098	+				-1.6
49,098	+				-0.7
49,099	-				-0.4
49,099	-				+0.4
49,114	+				-0.8
49,240	+				-1.1
49,240	+				-0.3
49,241	-				-1.2
49,241	-				-0.2
49,241	-				+0.0
49,241	-				-0.6