Strain Fitness in Variovorax sp. SCN45 around GFF7326

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
21,403	+		GFF7325	0.68	+0.1
21,403	+		GFF7325	0.68	-0.6
21,403	+		GFF7325	0.68	-1.0
21,403	+		GFF7325	0.68	-1.4
21,403	+		GFF7325	0.68	+0.0
21,403	+		GFF7325	0.68	-0.1
21,403	+		GFF7325	0.68	+0.4
21,403	+		GFF7325	0.68	-0.3
21,403	+		GFF7325	0.68	-1.4
21,403	+		GFF7325	0.68	-0.3
21,403	+		GFF7325	0.68	+0.7
21,403	+		GFF7325	0.68	-0.3
21,403	+		GFF7325	0.68	-1.1
21,403	+		GFF7325	0.68	-0.9
21,403	+		GFF7325	0.68	+0.4
21,403	+		GFF7325	0.68	+1.1
21,403	+		GFF7325	0.68	-0.1
21,403	+		GFF7325	0.68	-0.2
21,403	+		GFF7325	0.68	-1.7
21,403	+		GFF7325	0.68	+0.0
21,403	+		GFF7325	0.68	-0.3
21,403	+		GFF7325	0.68	-2.1
21,404	-		GFF7325	0.68	+0.7
21,404	-		GFF7325	0.68	+0.9
21,404	-		GFF7325	0.68	+1.5
21,404	-		GFF7325	0.68	+0.0
21,404	-		GFF7325	0.68	-0.3
21,404	-		GFF7325	0.68	-0.1
21,404	-		GFF7325	0.68	-1.0
21,404	-		GFF7325	0.68	+0.0
21,404	-		GFF7325	0.68	-0.2
21,404	-		GFF7325	0.68	-1.7
21,404	-		GFF7325	0.68	-2.3
21,404	-		GFF7325	0.68	-0.3
21,404	-		GFF7325	0.68	+0.4
21,404	-		GFF7325	0.68	-0.3
21,404	-		GFF7325	0.68	-0.1
21,404	-		GFF7325	0.68	+0.6
21,404	-		GFF7325	0.68	-0.9
21,404	-		GFF7325	0.68	+0.3
21,404	-		GFF7325	0.68	+0.1
21,404	-		GFF7325	0.68	-0.6
21,404	-		GFF7325	0.68	-1.2
21,404	-		GFF7325	0.68	-1.4
21,404	-		GFF7325	0.68	+0.6
21,404	-		GFF7325	0.68	-0.1
21,404	-		GFF7325	0.68	-0.5
21,598	+		GFF7325	0.77	-1.6
21,599	-		GFF7325	0.77	-2.9
21,989	+				+0.2
21,990	-				-0.3
22,161	-				+1.1
22,161	-				+1.1
22,161	-				+0.3
22,172	-				-0.2
22,172	-				+1.7
22,172	-				+0.4
22,172	-				+0.1
22,177	+				+0.3
22,177	+				+0.7
22,178	-				-1.4
22,178	-				+1.1
22,178	-				-0.8
22,183	-				-0.2
22,183	-				-0.1
22,183	-				-1.0
22,197	+				-0.6
22,197	+				-1.3
22,197	+				+2.1
22,197	+				+1.1
22,197	+				-0.2
22,197	+				-1.2
22,197	+				+0.3
22,197	+				-0.3
22,197	+				-1.2
22,246	+				-0.3
22,247	-				-0.4
22,247	-				-0.8
22,247	-				-0.6
22,360	+				+0.9
22,380	+				+0.0
22,380	+				-0.4
22,380	+				-0.3
22,380	+				-1.3
22,380	+				-1.2
22,381	-				-1.1
22,381	-				-1.1
22,381	-				-0.2
22,381	-				+0.1
22,381	-				+0.1
22,381	-				-1.6
22,391	-				-1.1
22,391	-				-0.2
22,391	-				-1.7
22,470	-		GFF7326	0.15	+0.7
22,616	+		GFF7326	0.28	-0.6
22,616	+		GFF7326	0.28	+0.2
22,616	+		GFF7326	0.28	-0.5
22,616	+		GFF7326	0.28	+0.3
22,617	-		GFF7326	0.28	+0.3
22,655	+		GFF7326	0.31	+0.1
22,656	-		GFF7326	0.31	-0.2
22,656	-		GFF7326	0.31	+0.5
22,656	-		GFF7326	0.31	-0.3
22,967	+		GFF7326	0.57	+0.1
22,967	+		GFF7326	0.57	+0.1
22,967	+		GFF7326	0.57	+0.2
22,967	+		GFF7326	0.57	-0.9
22,967	+		GFF7326	0.57	+0.5
22,967	+		GFF7326	0.57	-0.2
22,967	+		GFF7326	0.57	-0.5
22,967	+		GFF7326	0.57	-1.4
22,967	+		GFF7326	0.57	+0.3
22,967	+		GFF7326	0.57	-0.2
22,967	+		GFF7326	0.57	-2.0
22,967	+		GFF7326	0.57	-0.3
22,967	+		GFF7326	0.57	+0.3
22,967	+		GFF7326	0.57	-0.1
22,967	+		GFF7326	0.57	+0.8
22,967	+		GFF7326	0.57	-0.7
22,967	+		GFF7326	0.57	+0.7
22,967	+		GFF7326	0.57	+0.8
22,967	+		GFF7326	0.57	-0.0
22,967	+		GFF7326	0.57	-0.4
22,967	+		GFF7326	0.57	-0.1
22,967	+		GFF7326	0.57	-0.2
22,967	+		GFF7326	0.57	-0.9
22,968	-		GFF7326	0.57	-1.0
22,968	-		GFF7326	0.57	+0.4
22,968	-		GFF7326	0.57	-1.3
22,968	-		GFF7326	0.57	+1.4
22,968	-		GFF7326	0.57	+0.0
22,968	-		GFF7326	0.57	-0.2
22,968	-		GFF7326	0.57	-0.4
22,968	-		GFF7326	0.57	-0.1
22,968	-		GFF7326	0.57	-1.6
22,968	-		GFF7326	0.57	+0.0
22,968	-		GFF7326	0.57	-0.8
22,968	-		GFF7326	0.57	-1.5
22,968	-		GFF7326	0.57	+1.2
22,968	-		GFF7326	0.57	-0.5
22,968	-		GFF7326	0.57	-0.5
22,968	-		GFF7326	0.57	-0.3
22,968	-		GFF7326	0.57	-0.3
22,968	-		GFF7326	0.57	-1.1
23,126	+		GFF7326	0.70	-2.0
23,168	+		GFF7326	0.73	-1.3
23,168	+		GFF7326	0.73	+0.4
23,168	+		GFF7326	0.73	+1.1
23,169	-		GFF7326	0.74	+1.0
23,169	-		GFF7326	0.74	+0.5
23,169	-		GFF7326	0.74	+0.7
23,169	-		GFF7326	0.74	-1.1
23,169	-		GFF7326	0.74	+0.2
23,169	-		GFF7326	0.74	-0.9
23,219	+		GFF7326	0.78	-0.4
23,219	+		GFF7326	0.78	-0.3
23,219	+		GFF7326	0.78	-0.8
23,220	-		GFF7326	0.78	-0.4
23,220	-		GFF7326	0.78	-0.3
23,220	-		GFF7326	0.78	-0.4
23,222	+		GFF7326	0.78	-0.5
23,222	+		GFF7326	0.78	+0.1
23,222	+		GFF7326	0.78	-0.4
23,222	+		GFF7326	0.78	+0.1
23,222	+		GFF7326	0.78	-0.8
23,222	+		GFF7326	0.78	-0.0
23,223	-		GFF7326	0.78	+0.5
23,223	-		GFF7326	0.78	+0.1
23,223	-		GFF7326	0.78	-1.8
23,223	-		GFF7326	0.78	+0.4
23,223	-		GFF7326	0.78	-0.1
23,223	-		GFF7326	0.78	-0.4
23,223	-		GFF7326	0.78	-1.7
23,223	-		GFF7326	0.78	+0.4
23,223	-		GFF7326	0.78	+0.6
23,223	-		GFF7326	0.78	-0.3
23,268	+		GFF7326	0.82	-0.3
23,268	+		GFF7326	0.82	+0.5
23,268	+		GFF7326	0.82	-0.5
23,268	+		GFF7326	0.82	-0.2
23,268	+		GFF7326	0.82	-0.9
23,268	+		GFF7326	0.82	-0.7
23,268	+		GFF7326	0.82	-1.7
23,268	+		GFF7326	0.82	-1.6
23,268	+		GFF7326	0.82	+0.3
23,268	+		GFF7326	0.82	+0.1
23,268	+		GFF7326	0.82	+1.7
23,268	+		GFF7326	0.82	+2.3
23,268	+		GFF7326	0.82	+0.2
23,268	+		GFF7326	0.82	-0.4
23,269	-		GFF7326	0.82	-0.4
23,269	-		GFF7326	0.82	+0.7
23,269	-		GFF7326	0.82	+0.2
23,269	-		GFF7326	0.82	+0.7
23,269	-		GFF7326	0.82	-0.2
23,269	-		GFF7326	0.82	-0.4
23,269	-		GFF7326	0.82	-0.7
23,269	-		GFF7326	0.82	+0.2
23,269	-		GFF7326	0.82	-0.3
23,269	-		GFF7326	0.82	-1.0
23,381	+				+0.6
23,381	+				+0.9
23,381	+				-0.8
23,381	+				+1.1
23,381	+				-0.0
23,382	-				-0.5
23,382	-				+1.0
23,382	-				+0.1
23,382	-				+0.0
23,382	-				+0.5
23,490	+				-1.1
23,490	+				-0.6
23,490	+				+0.9
23,490	+				-0.3
23,490	+				-0.4
23,491	-				+0.3
23,491	-				+0.6
23,491	-				-0.6
23,491	-				+0.6
23,491	-				-0.1
23,491	-				-0.9
23,527	+				-0.3
23,617	+		GFF7327	0.13	-0.5
23,617	+		GFF7327	0.13	-0.0
23,617	+		GFF7327	0.13	+0.6
23,617	+		GFF7327	0.13	+0.4
23,617	+		GFF7327	0.13	-0.3
23,617	+		GFF7327	0.13	-1.5
23,618	-		GFF7327	0.13	-0.3
23,618	-		GFF7327	0.13	+0.6
23,618	-		GFF7327	0.13	-0.8
23,618	-		GFF7327	0.13	-0.6
23,618	-		GFF7327	0.13	+0.9
23,618	-		GFF7327	0.13	-0.3
23,618	-		GFF7327	0.13	-0.1
23,618	-		GFF7327	0.13	-0.1
23,618	-		GFF7327	0.13	-1.2
23,677	+		GFF7327	0.18	+0.3
23,715	-		GFF7327	0.22	+0.7
23,879	+		GFF7327	0.37	-2.6
23,879	+		GFF7327	0.37	-0.1
23,879	+		GFF7327	0.37	+1.0
23,879	+		GFF7327	0.37	-0.1
23,880	-		GFF7327	0.37	+0.2
23,880	-		GFF7327	0.37	-0.6
23,880	-		GFF7327	0.37	-0.6
23,880	-		GFF7327	0.37	-0.3
23,880	-		GFF7327	0.37	-0.8
23,880	-		GFF7327	0.37	+0.4
23,911	+		GFF7327	0.40	-0.5
23,911	+		GFF7327	0.40	+0.1
23,911	+		GFF7327	0.40	+0.2
23,911	+		GFF7327	0.40	-0.2
23,911	+		GFF7327	0.40	-1.3
23,956	+		GFF7327	0.45	-0.7
23,956	+		GFF7327	0.45	-1.0
23,956	+		GFF7327	0.45	+0.1
23,956	+		GFF7327	0.45	+0.5
23,957	-		GFF7327	0.45	+0.9
23,957	-		GFF7327	0.45	+0.0
24,015	+		GFF7327	0.50	-1.4
24,015	+		GFF7327	0.50	-1.4
24,015	+		GFF7327	0.50	-0.4
24,025	+		GFF7327	0.51	+0.3
24,025	+		GFF7327	0.51	-0.5
24,025	+		GFF7327	0.51	+0.4
24,026	-		GFF7327	0.51	+0.7
24,026	-		GFF7327	0.51	-0.5
24,026	-		GFF7327	0.51	-0.6
24,130	+		GFF7327	0.61	+0.5
24,130	+		GFF7327	0.61	-2.4
24,130	+		GFF7327	0.61	-1.7
24,130	+		GFF7327	0.61	-0.0
24,130	+		GFF7327	0.61	-0.8
24,130	+		GFF7327	0.61	-0.4
24,130	+		GFF7327	0.61	-0.1
24,130	+		GFF7327	0.61	-0.1
24,131	-		GFF7327	0.61	-0.4
24,131	-		GFF7327	0.61	-0.9
24,131	-		GFF7327	0.61	-0.8
24,131	-		GFF7327	0.61	-0.6
24,131	-		GFF7327	0.61	+1.9
24,131	-		GFF7327	0.61	-0.3
24,131	-		GFF7327	0.61	+1.7
24,131	-		GFF7327	0.61	-0.7
24,131	-		GFF7327	0.61	-1.5
24,134	+		GFF7327	0.61	-1.0
24,134	+		GFF7327	0.61	-0.2
24,134	+		GFF7327	0.61	-0.3
24,134	+		GFF7327	0.61	+1.3
24,134	+		GFF7327	0.61	+0.4
24,134	+		GFF7327	0.61	-2.1
24,134	+		GFF7327	0.61	-1.2
24,134	+		GFF7327	0.61	+0.0
24,134	+		GFF7327	0.61	-0.7
24,134	+		GFF7327	0.61	-0.5
24,134	+		GFF7327	0.61	-0.0
24,135	-		GFF7327	0.61	+1.0
24,135	-		GFF7327	0.61	+0.6
24,135	-		GFF7327	0.61	+0.4
24,135	-		GFF7327	0.61	+0.7
24,135	-		GFF7327	0.61	+0.1
24,135	-		GFF7327	0.61	+0.4
24,163	+		GFF7327	0.64	-2.2
24,164	-		GFF7327	0.64	-2.3
24,203	+		GFF7327	0.68	-0.8
24,204	-		GFF7327	0.68	+0.7
24,283	+		GFF7327	0.75	-0.1
24,283	+		GFF7327	0.75	-1.9
24,327	-		GFF7327	0.79	-0.9
24,371	+		GFF7327	0.83	-0.7
24,371	+		GFF7327	0.83	+0.1
24,372	-		GFF7327	0.84	+1.0
24,372	-		GFF7327	0.84	-1.9
24,372	-		GFF7327	0.84	-0.9
24,372	-		GFF7327	0.84	-0.3
24,388	+		GFF7327	0.85	-0.3
24,388	+		GFF7327	0.85	+0.1
24,388	+		GFF7327	0.85	+0.1
24,388	+		GFF7327	0.85	+0.5
24,388	+		GFF7327	0.85	+0.6
24,388	+		GFF7327	0.85	-0.9
24,388	+		GFF7327	0.85	-0.3
24,388	+		GFF7327	0.85	-0.2
24,388	+		GFF7327	0.85	+0.1
24,388	+		GFF7327	0.85	-0.0
24,388	+		GFF7327	0.85	-0.0
24,388	+		GFF7327	0.85	-0.2
24,388	+		GFF7327	0.85	-0.1
24,388	+		GFF7327	0.85	+1.2
24,388	+		GFF7327	0.85	-0.3
24,389	-		GFF7327	0.85	-0.1
24,389	-		GFF7327	0.85	-0.2
24,389	-		GFF7327	0.85	-0.1
24,389	-		GFF7327	0.85	-0.9
24,389	-		GFF7327	0.85	+0.4
24,389	-		GFF7327	0.85	-0.4
24,389	-		GFF7327	0.85	-0.2
24,389	-		GFF7327	0.85	+0.5
24,389	-		GFF7327	0.85	-1.4
24,389	-		GFF7327	0.85	-0.2
24,397	+		GFF7327	0.86	+1.4
24,397	+		GFF7327	0.86	-0.2
24,397	+		GFF7327	0.86	+0.4
24,397	+		GFF7327	0.86	+1.1
24,397	+		GFF7327	0.86	-0.4
24,397	+		GFF7327	0.86	-0.9
24,397	+		GFF7327	0.86	+1.0
24,397	+		GFF7327	0.86	-0.1
24,397	+		GFF7327	0.86	+1.7
24,397	+		GFF7327	0.86	-0.7
24,397	+		GFF7327	0.86	+1.7
24,397	+		GFF7327	0.86	+0.1
24,398	-		GFF7327	0.86	+0.1
24,398	-		GFF7327	0.86	+0.2
24,398	-		GFF7327	0.86	+0.3
24,398	-		GFF7327	0.86	-0.8
24,398	-		GFF7327	0.86	-0.4
24,398	-		GFF7327	0.86	+0.0
24,398	-		GFF7327	0.86	+0.7
24,398	-		GFF7327	0.86	-0.6
24,418	+		GFF7327	0.88	+0.1
24,418	+		GFF7327	0.88	-0.3
24,418	+		GFF7327	0.88	-0.4
24,419	-		GFF7327	0.88	-0.5
24,419	-		GFF7327	0.88	+0.4