Strain Fitness in Variovorax sp. SCN45 around GFF7022

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7021 and GFF7022 overlap by 4 nucleotidesGFF7022 and GFF7023 are separated by 7 nucleotides GFF7021 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 38,084 to 39,121 GFF7021 GFF7022 - Amidohydrolase domain protein, at 39,118 to 40,794 GFF7022 GFF7023 - Metal chaperone, involved in Zn homeostasis, at 40,802 to 41,773 GFF7023 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.723 kb on + strand, within GFF7021at 38.724 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.849 kb on + strand, within GFF7021at 38.849 kb on + strand, within GFF7021at 38.850 kb on - strand, within GFF7021at 39.142 kb on + strandat 39.142 kb on + strandat 39.358 kb on + strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.520 kb on + strand, within GFF7022at 39.521 kb on - strand, within GFF7022at 39.521 kb on - strand, within GFF7022at 40.147 kb on + strand, within GFF7022at 40.168 kb on + strand, within GFF7022at 40.169 kb on - strand, within GFF7022at 40.169 kb on - strand, within GFF7022at 40.378 kb on + strand, within GFF7022at 40.378 kb on + strand, within GFF7022at 40.396 kb on + strand, within GFF7022at 40.396 kb on + strand, within GFF7022

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
38,723 + GFF7021 0.62 -0.3
38,724 - GFF7021 0.62 -0.1
38,787 - GFF7021 0.68 +0.0
38,787 - GFF7021 0.68 +1.0
38,787 - GFF7021 0.68 +0.9
38,787 - GFF7021 0.68 +0.1
38,849 + GFF7021 0.74 -0.1
38,849 + GFF7021 0.74 +0.7
38,850 - GFF7021 0.74 -0.3
39,142 + -0.9
39,142 + -0.3
39,358 + GFF7022 0.14 -0.0
39,359 - GFF7022 0.14 -0.6
39,359 - GFF7022 0.14 -2.2
39,359 - GFF7022 0.14 +0.0
39,359 - GFF7022 0.14 -0.7
39,520 + GFF7022 0.24 -0.7
39,521 - GFF7022 0.24 +2.3
39,521 - GFF7022 0.24 -0.4
40,147 + GFF7022 0.61 -1.7
40,168 + GFF7022 0.63 +0.1
40,169 - GFF7022 0.63 -0.8
40,169 - GFF7022 0.63 -0.1
40,378 + GFF7022 0.75 +0.1
40,378 + GFF7022 0.75 +0.4
40,396 + GFF7022 0.76 -1.1
40,396 + GFF7022 0.76 -0.5

Or see this region's nucleotide sequence