Strain Fitness in Variovorax sp. SCN45 around GFF6771

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
16,011	+		GFF6769	0.80	-0.1
16,012	-		GFF6769	0.80	-0.1
16,012	-		GFF6769	0.80	+0.4
16,280	+		GFF6770	0.13	-0.1
16,280	+		GFF6770	0.13	-0.5
16,280	+		GFF6770	0.13	-1.7
16,280	+		GFF6770	0.13	+0.8
16,280	+		GFF6770	0.13	+0.4
16,280	+		GFF6770	0.13	-1.7
16,281	-		GFF6770	0.13	+0.1
16,553	+		GFF6770	0.55	-1.3
16,553	+		GFF6770	0.55	+0.9
16,554	-		GFF6770	0.55	-0.3
16,554	-		GFF6770	0.55	+0.3
16,554	-		GFF6770	0.55	-0.1
16,702	+		GFF6770	0.78	-0.7
16,703	-		GFF6770	0.78	-0.3
16,703	-		GFF6770	0.78	+0.8
17,056	+		GFF6771	0.24	-0.4
17,056	+		GFF6771	0.24	-1.1
17,056	+		GFF6771	0.24	-0.9
17,056	+		GFF6771	0.24	-0.2
17,057	-		GFF6771	0.24	+0.8
17,057	-		GFF6771	0.24	-0.6
17,057	-		GFF6771	0.24	-0.0
17,057	-		GFF6771	0.24	-0.1
17,057	-		GFF6771	0.24	-1.3
17,057	-		GFF6771	0.24	+0.4
17,239	+		GFF6771	0.44	-0.9
17,239	+		GFF6771	0.44	-0.9
17,239	+		GFF6771	0.44	-0.5
17,240	-		GFF6771	0.44	-0.5
17,240	-		GFF6771	0.44	-0.1
17,257	+		GFF6771	0.46	-1.1
17,257	+		GFF6771	0.46	-0.6
17,257	+		GFF6771	0.46	+0.0
17,257	+		GFF6771	0.46	-1.1
17,258	-		GFF6771	0.46	-0.3
17,258	-		GFF6771	0.46	-0.6
17,258	-		GFF6771	0.46	+0.2
17,258	-		GFF6771	0.46	+1.1
17,736	+				+0.1
17,752	+				+0.3
17,752	+				+1.6
17,752	+				+0.0
17,752	+				+0.7
17,753	-				+0.0
17,753	-				+0.5
17,753	-				+0.1
17,753	-				-0.5
17,842	+				-0.9
17,842	+				-0.7
17,843	-				-0.4
17,855	-				-1.0
18,040	+		GFF6772	0.17	-0.4
18,041	-		GFF6772	0.17	-0.6
18,400	+		GFF6772	0.37	-0.3
18,400	+		GFF6772	0.37	-1.1
18,512	-		GFF6772	0.44	-1.7
18,532	+		GFF6772	0.45	-1.1
18,532	+		GFF6772	0.45	-1.1
18,533	-		GFF6772	0.45	+0.8
18,533	-		GFF6772	0.45	-2.1