Strain Fitness in Variovorax sp. SCN45 around GFF6335

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
120	+				-0.0
120	+				-0.7
135	-				-1.5
163	+				-0.6
241	+				-0.2
280	+		GFF6334	0.24	+0.0
281	-		GFF6334	0.25	-0.5
514	+				-0.2
514	+				+0.2
514	+				-0.1
702	+				-0.1
703	-				-0.6
1,063	+		GFF6335	0.39	-0.7
1,063	+		GFF6335	0.39	-0.5
1,063	+		GFF6335	0.39	-1.0
1,130	+		GFF6335	0.58	+0.2
1,130	+		GFF6335	0.58	-1.9
1,131	-		GFF6335	0.58	-0.6
1,131	-		GFF6335	0.58	+0.1
1,412	+				-0.4
1,480	+		GFF6336	0.14	+0.3
1,508	+		GFF6336	0.19	+0.5
1,532	+		GFF6336	0.24	-0.5
1,532	+		GFF6336	0.24	-0.4
1,533	-		GFF6336	0.24	+0.1
1,533	-		GFF6336	0.24	+0.1
1,628	+		GFF6336	0.43	+1.7
2,005	+				-0.6
2,005	+				-1.2
2,006	-				-0.5
2,015	+				+0.6
2,015	+				-0.2
2,015	+				-0.2
2,046	+				-2.5
2,046	+				-0.4
2,060	+				+1.8
2,061	-				-0.9
2,061	-				-0.5
2,061	-				-0.4
2,061	-				+2.1
2,115	+				-0.2
2,116	-				-0.3
2,176	+		GFF6337	0.15	-1.2
2,176	+		GFF6337	0.15	+1.6
2,177	-		GFF6337	0.15	-0.1
2,177	-		GFF6337	0.15	+0.3
2,177	-		GFF6337	0.15	-0.4
2,177	-		GFF6337	0.15	-0.5